Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1868 ATGCTGGTGAAAATGGAGGGAAGCGTAACAAAATGTAGGTTCCAAAACAAAAACATCCCCTCTTTCGTTACTTGCTCTGCTGTCTCTCACTCTAGTTGCGTGCTCGCCAAAATCCTTGTTCATTTGCAGAATTTCGGTGGTCTTCCACCATGGGAGGACATCCGTTCTTTACAGCTTGAAACAGCAGATATAGCAGAAGACAATAATGGGGTTGTAAATCCAGAGGATGCAAAGCCAGAAGAATCTGAGAATTACGATAAAATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGCCTGTCCGGGCTGAGCCAAAAGATAAGGAAGTCCCTTCTGTGGAAGAGGAAGAGGATGCGGTGGAGGAAAATAAGAAAAAACACTTGAATGTTGTGTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGTGGCCAGATACTTTTCCTTAGTGGTCAGGTTGATGAACGTACTATCCAAAAATATGAGAAAGAAGCAAAGGACAAAAGTAGAGAAAGTTGGTATATGGCTTATATAATGGACACAAACGAGGAGGAGAGGGTAAAGGGTAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACAAGGTTCACAATTTTGGATGCACCCGGTCACAAAAGTTATGTCCCCAACATGATCAGTGGTGCGTCTCAAGCTGATACCGGAGTATTGGTGATATCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAGACACTAGGTGTGGCTAAGCTGCTTGTTGTTGTCAATAAAATGGATGATCCTACAGTCAATTGGTCAAAAGAACGGTATGATGAAATTGAATCCAAGATGGTTCCCTTTCTGAAGCAATCAGGCTACAATGTGAAGAAAGATGTCCTGTTCTTACCAATATCTGGGCTGATTGGCACAAACTTGAAAACAAGAGTGGATAAAAGCATTTGTCCATGGTGGAATGGGCCCTGTCTATTTGAAGCTCTCGATGCTGTTGAAGTTCCTCCTCGAGATCCCAAAGGTCCATTCAGGATGCCTATCATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGCAGTGTTTGTGAGGGGGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTATTGCTATATTTGTTGATGAAGATCGAGTTAAGCGTGCTGGACCGGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAAGAAGATGATGTATCATCTGGGTTTATCCTGTCTAGTGTAGCAAAACCAATACCATCTGTTACTGAGTTTGTTGCTCAGCTGGTGATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACATTCACTCTGTAGTTGAAGAATGTGAGATTGTTGAGCTCCTACAGCAAATTGATCCAAAAACGAAGAGACCCATGAAAAAAAAAATTCTATTTGTGAAGAATGGTGCTGTTGTTGTCTGCCGTGTTCAGGTTAATAATTCCATATGCATTGAGAAATTCTCTGATTTTCCACAACTTGGAAGGTTCACTCTTCGTACTGAAGGAAAAACTGTTGCAGTGGGAAAAGTCACTGGTTTTTAA 1656 0.4173 MLVKMEGSVTKCRFQNKNIPSFVTCSAVSHSSCVLAKILVHLQNFGGLPPWEDIRSLQLETADIAEDNNGVVNPEDAKPEESENYDKMDEDPKQEVQAQPVRAEPKDKEVPSVEEEEDAVEENKKKHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADTGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLIGTNLKTRVDKSICPWWNGPCLFEALDAVEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVCEGDSLLVMPNKDQVKVIAIFVDEDRVKRAGPGENLRIRLSGVEEDDVSSGFILSSVAKPIPSVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKRPMKKKILFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1868 551 Gene3D - 106 349 IPR027417 -
Glsi13g1868 551 MobiDBLite consensus disorder prediction 73 121 - -
Glsi13g1868 551 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 445 550 IPR009001 -
Glsi13g1868 551 CDD eRF3_II 356 437 - -
Glsi13g1868 551 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 353 439 - -
Glsi13g1868 551 Gene3D Translation factors 444 551 - -
Glsi13g1868 551 Pfam Elongation factor Tu C-terminal domain 442 549 IPR004160 -
Glsi13g1868 551 PRINTS GTP-binding elongation factor signature 224 235 IPR000795 GO:0003924|GO:0005525
Glsi13g1868 551 PRINTS GTP-binding elongation factor signature 268 277 IPR000795 GO:0003924|GO:0005525
Glsi13g1868 551 PRINTS GTP-binding elongation factor signature 208 218 IPR000795 GO:0003924|GO:0005525
Glsi13g1868 551 PRINTS GTP-binding elongation factor signature 129 142 IPR000795 GO:0003924|GO:0005525
Glsi13g1868 551 Pfam Elongation factor Tu GTP binding domain 125 328 IPR000795 GO:0003924|GO:0005525
Glsi13g1868 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 360 IPR027417 -
Glsi13g1868 551 CDD EF1_alpha 129 350 - -
Glsi13g1868 551 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 125 351 IPR000795 GO:0003924|GO:0005525
Glsi13g1868 551 MobiDBLite consensus disorder prediction 65 121 - -
Glsi13g1868 551 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 105 349 - -
Glsi13g1868 551 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 181 196 IPR031157 -
Glsi13g1868 551 CDD eRF3_C_III 443 549 - -
Glsi13g1868 551 Gene3D Translation factors 354 439 - -
Glsi13g1868 551 SUPERFAMILY Translation proteins 348 441 IPR009000 -
Glsi13g1868 551 PANTHER TRANSLATION FACTOR 117 549 - -
Glsi13g1868 551 FunFam Putative translation elongation/initiation factor family protein 443 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1868 Glsi-ChrGlsi13 34421531 34443310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1868 63 549 Eukaryotic Initiation Factors Gene Family AT5G10630 35.020 3.27e-93 297