Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1864 ATGGGTATCAAGGATCTTCTCAGATTCATGAAGCCTTATATCGAACCCATTCACATCAAGAAATATGCCGGCAAACGCGTGGGTATTGATGCATATTCATGGCTTCATAAGGGAGCTTATTCCTGTAGTATGGAGCTTTGTCTCAATTCTGATAACGAAAGGAAGTTCCGGTACATAGAATATTTTATGCATCGAATCAAGCTGCTTCGTCACCATAAGATAACGCCGGTTGTTGTTTTTGATGGTGGCAAAATTCCTTGCAAGGCAGCAACAGAGGAAGACAGGAAAAGAAAAAGAAGTGCGAATCGTGAATTGGCAATGGCGAAGCTCAAAGAAGGGAATGTCAATGCAGCCTCAGAGCTATTCCAGAGAGCAGTGAATGTTACTCCCCATATGGCCCATCAACTGATTCAGATCCTGAGATCAGAGAACATTGAGTTTGTTGTAGCTCCATACGAAGCAGATGCTCAGTTAGCATACATGTCCAACCTTAAAGCAGGAAAGGGTGGAGTTGTAGCAGTGATCACAGAGGATAGTGATCTAATAGCATATGGTTGTCCAGCTATTATCTTTAAGATGGATCGTTATGGGAAGGGCGAAAGCATCGAGTTAGAGAAGGTTTTTAAAGCTGAGACTTGTAAACCTTCCTTCCGGAGTTTTGATTTGGAACTCTTCACAGGTATGTGCGTGCTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCACGAGCTCATGCCTTAGTTTCCAAGTATCGGAACCTAGATCGTGTTTTATCTGTTCTTAAGTTAGAGAAGGGCAACAAAATGCCTGAAGATTACGCCAAATCCTTCGAAGAGGCAATTGCCGTGTTCCAGCATGCTCGAATATATGATCCCATTGTTAAGGATCTCAAGCACATCACTCCTCTTCCGCCAAAGCTTCTTCAGTCCCTTGATGGAAAACTTGATTTCTTGGGACCAGAAATTCCTTCAACAATAGTTATTGCGGTAGCTGAAGGAAATTTAAACCCATCAACTAAGGAAGCCTTTGATAAACTCGAATGTTCTGAAGTTTCTTTAGACTCCGTTGCCCTCCAGAGCGCTGGTCAACTTCATGGAGTTGAAGTTTCTGCACCATTTACGGAGAGCTGCTTTATAGTCTATGACTCCCATAATGCCAGTAAAAACAGTACGGTGACAAGGCAGAATCCAATATTGAACAAAGAGAAGTATTCTGATGAAGCATTGGCACTTCAGAAACTAATTATGCCATTGGGATCCTGCAGAACGGTAGAAAGGGCCTGTATTCCTGATGAAATTCCATTGAAGGTTCCTGACAACAATCCATTCAGGATCAGTCAACCTGAGGAAATTTCTTTGATTCAGGGAGAGAACCCTGCTGAAATAGTTTCCATAGTCAGCAGTGTGGAATATATGGACGCGTGCATATCTCCAGATAGCTTTCAAGAAGAGAAGTCTGAAAATCTCTCAAAGAAAAGAAAATTTCAGACCATTTGCTCCGATCAAGCAGAGATCACTGATGACCAGGTTTCAGTAGTGACTGAAGTAGAAGATCCAGATGTTTTATGTTTGACTGTGGAATCCGAAGAAAGTGTAAGTTCTAAAACTAAAAAAGTTGCTGATTTGAAAGGAAGAGGTGCAGTTGAAAAGAAATCCAAGAGAAGCAATTGCAAGAAAACCGGGAGTAAGAATAGCACTATCTTGAATTTTTTTTCTCGGGTGTAA 1737 0.4168 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLNSDNERKFRYIEYFMHRIKLLRHHKITPVVVFDGGKIPCKAATEEDRKRKRSANRELAMAKLKEGNVNAASELFQRAVNVTPHMAHQLIQILRSENIEFVVAPYEADAQLAYMSNLKAGKGGVVAVITEDSDLIAYGCPAIIFKMDRYGKGESIELEKVFKAETCKPSFRSFDLELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRVLSVLKLEKGNKMPEDYAKSFEEAIAVFQHARIYDPIVKDLKHITPLPPKLLQSLDGKLDFLGPEIPSTIVIAVAEGNLNPSTKEAFDKLECSEVSLDSVALQSAGQLHGVEVSAPFTESCFIVYDSHNASKNSTVTRQNPILNKEKYSDEALALQKLIMPLGSCRTVERACIPDEIPLKVPDNNPFRISQPEEISLIQGENPAEIVSIVSSVEYMDACISPDSFQEEKSENLSKKRKFQTICSDQAEITDDQVSVVTEVEDPDVLCLTVESEESVSSKTKKVADLKGRGAVEKKSKRSNCKKTGSKNSTILNFFSRV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1864 578 MobiDBLite consensus disorder prediction 539 567 - -
Glsi13g1864 578 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Glsi13g1864 578 FunFam exonuclease 1 218 291 - -
Glsi13g1864 578 CDD H3TH_FEN1-like 223 295 - -
Glsi13g1864 578 Gene3D - 1 213 - -
Glsi13g1864 578 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 525 IPR006084 -
Glsi13g1864 578 SMART xpgineu 141 213 IPR006086 GO:0004518
Glsi13g1864 578 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Glsi13g1864 578 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Glsi13g1864 578 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Glsi13g1864 578 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Glsi13g1864 578 SMART xpgn3 1 102 IPR006085 GO:0004518
Glsi13g1864 578 MobiDBLite consensus disorder prediction 539 559 - -
Glsi13g1864 578 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Glsi13g1864 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Glsi13g1864 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Glsi13g1864 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Glsi13g1864 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Glsi13g1864 578 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Glsi13g1864 578 Gene3D - 219 291 - -
Glsi13g1864 578 FunFam Exonuclease 1, putative 1 214 - -
Glsi13g1864 578 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 349 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1864 Glsi-ChrGlsi13 34403230 34408116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1864 1 315 Core DNA Replication Machinery Family AT5G26680 26.462 1.50e-15 77.0