Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1858 ATGCCGGATTCCATTGGCAGAGAGTTAAAGCCGAAGAAAGAGGGCACTGTATATGGGTGGTGGAGGAACACTGGTAGCCGGGATTCGTCGCTTATCTCTACGTCGCACTTACGCAATGAATTAGACAAAGGGGAAGGGTCCGAAGAGGAGTTTAGGATCGAGGAATACTTTGATATCTCCAGCTTGAATCTTATCAAACTGCCTACACGGACCCATTTCAAAGTTTGTTCCATGGATCCACACAAGAAGGGTATGTTAGAAACAGAATTTTTCACAGAGTATGGAGAGGCAAGTAGATACCAGGTCCAAGAAGTCGTTGGAAAAGGAAGTTACGGCGTTGTGGGTTCTGCCATTGACACTCATACTGGGGAAAAGATTGCAATTAAGAAAATTAGTGATGTTTTTGAGCATGTATCAGATGCCACACGGATCCTGAGAGAAATTAAACTCCTACGGTTGCTCCGACATCCTGATATTGTAGAAATTAAGCATATAATGCTTCCTCCTTCACGACGAGAGTTCCGGGATATCTATGTTGTGTTTGAGTTGATGGAATCTGACCTTCATCAAGTAATTAAAGCAAATGACGATCTTACTCCTGAGCATCACCAATTTTTCTTGTACCAACTTCTTCGGGGACTGAAATATATACATACTGCAAATGTGTTTCATCGTGACTTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAAACTAAAAATATGTGATTTCGGGCTTGCTCGAGTTTCGTTCAATGATGCTCCGTCAGCTATATTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGCGGTTCTTTTTTCTCAAAATATACCCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACAGGGAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAGTTGGATCTCATGACTGATTTGCTTGGTACTCCTCCTGCTGAATCCATTTCAAGGATTCGAAATGAGAAAGCTAGAAGGTATCTTAGTAGCATGCAGAAAAAGCAACCAGTTCCATTCGCCCAAAAGTTCCCAAACTCAGATCCATTAGCCCTTCGTTTGCTCCAGCGCCTGCTTGCATTTGATCCTAAAGATCGTCCAACAGCTGAAGAGGCATTAGCTGATCCTTATTTCCATGGTTTGTCAAATGTGGATCGTGAACCATCCACTCAACCCATTTCGAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTCTAGAGTATCATCCGCAGATGCTCCAGGAATATCTTTGTGGTGGAGATCAGACCGGTTTTATGTATCCCAGTGGGGTTGACCGATTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAAAGAAGCACTCCATTGCAGAGACAGCACGTCTCCTTACCTAGAGAGCGGGTTTGTGCTCCCAAGGATGAAAATAATCAAACCGATGATTTTGAAAGGCGAACTGCAGCTGGTCTTCAGAGTTCCCCTAGGTCTGATGGAACTGATGCTGGAAACTTGGATGCACAAAATGGATTGTCCAAGCCGAACTTCAGTACCCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCGAAATGTATAGGTGTAAAACCACGGGAAGATCCCAAGGAGGAGTCAATTGCGGAGGTCAATGATGAGGCTGTAGATGGATTGACAGAGAAGGTGGCTGGCTTGCTAGCTTAA 1767 0.4358 MPDSIGRELKPKKEGTVYGWWRNTGSRDSSLISTSHLRNELDKGEGSEEEFRIEEYFDISSLNLIKLPTRTHFKVCSMDPHKKGMLETEFFTEYGEASRYQVQEVVGKGSYGVVGSAIDTHTGEKIAIKKISDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPAESISRIRNEKARRYLSSMQKKQPVPFAQKFPNSDPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLSNVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLCGGDQTGFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHVSLPRERVCAPKDENNQTDDFERRTAAGLQSSPRSDGTDAGNLDAQNGLSKPNFSTRSLLKSASISASKCIGVKPREDPKEESIAEVNDEAVDGLTEKVAGLLA 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1858 588 Gene3D Phosphorylase Kinase; domain 1 116 437 - -
Glsi13g1858 588 FunFam Mitogen-activated protein kinase 186 414 - -
Glsi13g1858 588 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 99 441 - -
Glsi13g1858 588 CDD STKc_TDY_MAPK 99 436 - -
Glsi13g1858 588 SMART serkin_6 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1858 588 ProSitePatterns MAP kinase signature. 135 238 IPR003527 GO:0004707|GO:0005524|GO:0006468
Glsi13g1858 588 MobiDBLite consensus disorder prediction 471 539 - -
Glsi13g1858 588 ProSitePatterns Protein kinases ATP-binding region signature. 106 130 IPR017441 GO:0005524
Glsi13g1858 588 MobiDBLite consensus disorder prediction 506 539 - -
Glsi13g1858 588 FunFam Mitogen-activated protein kinase 415 437 - -
Glsi13g1858 588 MobiDBLite consensus disorder prediction 489 505 - -
Glsi13g1858 588 Gene3D Transferase(Phosphotransferase) domain 1 186 414 - -
Glsi13g1858 588 Pfam Protein kinase domain 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1858 588 MobiDBLite consensus disorder prediction 557 573 - -
Glsi13g1858 588 ProSiteProfiles Protein kinase domain profile. 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1858 588 SUPERFAMILY Protein kinase-like (PK-like) 95 396 IPR011009 -
Glsi13g1858 588 MobiDBLite consensus disorder prediction 554 573 - -
Glsi13g1858 588 FunFam Mitogen-activated protein kinase 89 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1858 Glsi-ChrGlsi13 34361222 34366066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1858 86 586 MAP Kinase Gene Family AT3G18040 82.306 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Glsi13g1858 Pkinase 1.9e-67 CL0016