Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1857 ATGGACCCGACCTCGATCCCCCCTCCGCCCACCAACACCGTCCCCATGCCCACCATCACCGCCGACGCCGTTCCCTCCACCGTCCCCTTCCCTGACGTCGCAACTGCCGAAGCTAACAACCACGTGGCCCCCGCCGCGAACGCCAGCCCAAGTGCAGCCACGGCTCCCAACCACCCTCCCTATGCTGAGATGATATTTTCAGCAATCACGTCTCTGAAGGAGAAAAATGGGTCCAGCAAGAGAGCTATCGCCAAGTACATAGAGCAATCCTACCCGCACCTTCCGTCAACTCACTCGGCCTTGTTGACTCACCATTTGAAGCGCTTGAAGAGCTGTGGTAATCTTGTTATGGTCAAGAAATCTTACAAGCTCCCTAGATCTGATGCTTCCACTTCTATCGCCCAAAGAAGCCGTGGTCGACCGCCCAAGCCCAAGCCCCAGCCCCAACCCCAGCCACAGCCTCAGCCCTCTCCGCAGCAGCCACAGCCTGTGCCTCTCGCCAACGTGCAGCAAAATGCTGAGCCAGTGTGGGTCGCACTTGGGCTTGAAGATGAGCCCGCTTCTGAAGTGAAGAAAAGGGGCCCGGGTCGTCCAAGGAAGACTGGGGGAGAGGTAGTTGGGCAACCTGGGCCTCCGCTTCGGAGGGGGCGACCACCTGGGTCTACAACTGGGCCCGGGAAATCTAGGTTGCCTAAGAGGCCGGGCCGTCCTCCCAAGCCCAAATCTGTCTCGGCAATCTCTAATGGGCTTAAGAGGCGTCCGGGTCGCCCTCCCAAAATTCAATCTAACGTAACGGTCATCCCTTTTGCTGCTCCTGTGCCCAGCGTACCCGCCAACACCGACCCCACAGGCGCAGCTCCCGCGGTAACCCCAACTGCTATCGTCCCTATGGTATCTCCAAGACCTAGAGGACGGCCGAAGAAGAATGAAGCTGCAGTGCCAGTTTCGGGAGCTGCACCACAAGCTGTTATTGGAGCTAGTCGTGGTCGCGGACGTGGGATGAGGCAGGGACGACCTCCAAAGGTAGCAGGAGTGATGAGGCCCAAAAATCCCACTGGAAGACCCGTGGGCCGGCCGAAGAAGGGAACGTCTGCTACTACTTCGCTGAAGGTTGCTAACGAAGATCTGAGGAGGAAACTTGAATATTTTCAATCAAAAGTTAAGGAATCTCTTCGTGTGATTAAGCCCCACTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGACTTAGAGATACTGGCAACAATGGACCTTAGTGCGCCATTAAGAGATGAAACACATCAACTGCCGCAACTGCCACAGCAACAGCCAGTTCCACAACCACAACATCTGCCCCAGCCACAGATGTATGAACAAAATTTGCCGCAGTTACAGCCACAGCATCTATATCAGACACAGCAACTATTTCCCCCTCATGCACCGGGCCCAAGCTAG 1443 0.5586 MDPTSIPPPPTNTVPMPTITADAVPSTVPFPDVATAEANNHVAPAANASPSAATAPNHPPYAEMIFSAITSLKEKNGSSKRAIAKYIEQSYPHLPSTHSALLTHHLKRLKSCGNLVMVKKSYKLPRSDASTSIAQRSRGRPPKPKPQPQPQPQPQPSPQQPQPVPLANVQQNAEPVWVALGLEDEPASEVKKRGPGRPRKTGGEVVGQPGPPLRRGRPPGSTTGPGKSRLPKRPGRPPKPKSVSAISNGLKRRPGRPPKIQSNVTVIPFAAPVPSVPANTDPTGAAPAVTPTAIVPMVSPRPRGRPKKNEAAVPVSGAAPQAVIGASRGRGRGMRQGRPPKVAGVMRPKNPTGRPVGRPKKGTSATTSLKVANEDLRRKLEYFQSKVKESLRVIKPHFNHESPVTAIAAIQDLEILATMDLSAPLRDETHQLPQLPQQQPVPQPQHLPQPQMYEQNLPQLQPQHLYQTQQLFPPHAPGPS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1857 480 MobiDBLite consensus disorder prediction 430 480 - -
Glsi13g1857 480 FunFam Histone H1.2 54 134 - -
Glsi13g1857 480 Gene3D - 52 132 IPR036388 -
Glsi13g1857 480 SUPERFAMILY "Winged helix" DNA-binding domain 56 128 IPR036390 -
Glsi13g1857 480 MobiDBLite consensus disorder prediction 123 263 - -
Glsi13g1857 480 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi13g1857 480 MobiDBLite consensus disorder prediction 448 470 - -
Glsi13g1857 480 MobiDBLite consensus disorder prediction 278 366 - -
Glsi13g1857 480 MobiDBLite consensus disorder prediction 185 199 - -
Glsi13g1857 480 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi13g1857 480 MobiDBLite consensus disorder prediction 141 163 - -
Glsi13g1857 480 PANTHER HISTONE H1 36 261 - -
Glsi13g1857 480 SMART AT_hook_2 300 312 IPR017956 GO:0003677
Glsi13g1857 480 SMART AT_hook_2 251 263 IPR017956 GO:0003677
Glsi13g1857 480 SMART AT_hook_2 192 204 IPR017956 GO:0003677
Glsi13g1857 480 SMART AT_hook_2 353 365 IPR017956 GO:0003677
Glsi13g1857 480 SMART AT_hook_2 212 224 IPR017956 GO:0003677
Glsi13g1857 480 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Glsi13g1857 480 CDD H15 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi13g1857 480 Pfam linker histone H1 and H5 family 58 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi13g1857 480 PRINTS AT-hook-like domain signature 351 361 IPR017956 GO:0003677
Glsi13g1857 480 PRINTS AT-hook-like domain signature 298 309 IPR017956 GO:0003677
Glsi13g1857 480 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Glsi13g1857 480 PRINTS Histone H5 signature 188 207 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi13g1857 480 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi13g1857 480 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1857 Glsi-ChrGlsi13 34352456 34354755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1857 64 127 Single Myb Histone (SMH) Gene Family AT1G49950 46.875 2.58e-09 56.6