Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1855 ATGAAGAACATTCTTCAGAAGCTTCATATCATGTCTAATCAATCAGAAGATGCAGAAGGGTCTACTTCATCCAGAGGAAACAAGTCCGATGATGGTTCATTCCCTAAGAAACTTTTGAACTCTCACTCCTCTCAAAATTCTGAGCATAAACCCTTTTCAGGGCTTTCGAGTTGGTTGCATTCAGTTGCTAATAGGCAGAGTCCCAGTCCTCCATATTCTAATCTGAAAAGAGGAGAAAGAGTGGAACCATCTGATTCAGTGAGCAGTGGTGGTTTGGATATTGTTTCGGATTCAGCGATGCGTGATTCAGGGTCTGGCTCTTCGAGGGATCCTGAAGTAGAGGAAGAGTATCAGATACAACTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCCGAGGCAGTGCAGATTGAAGCTGTTAAGCAGATTAGTTTGGGCTCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGATACTGGAATTACAATGTTCTAGGTTATGATGACAAGATCTCTGATGGTTTCTATGATCTGTATGGGATCTTAACTGGATCGACCTCCACAAGAATGCCTTCCCTTGTAGATCTGCAAGGGACACCAACCTCAGATAGTGTCACTTGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAAAAGGCCCTAGAGCTGGCTTTCAAGCCAAGATTAAATTTTGAAGTAGTTGTAGATAGCAATTTGGTGCAGAGGCTTGCCACATTAGTGGCTGACTATATGGGGGGACCAGTTACAGATCCTGAAAGCATGACAAGAGCATGGAGGAGGCTTAGTTACAGTCTGAAAGCAACCCTTGGTAGCATGGTTTTACCACTAGGTTCTCTGACAATTGGATTGGCTCGGCATCGTGCATTGTTGTTTAAGGTTTTATCTGATAGTGTGGGCATCCCATGCCGGTTGGTGAAAGGACAGCAATATACTGGTTCCGATGATGTGGCCATGAACTTTGTCAAGATTGATGATGAAAGGGAGTACATTGTTGACCTAATGGCAGATCCTGGAACGCTTATTCTATCTGATGCAACTGAATCACATATTGAGTATGATGAATCTTTCTTTGTGGCCAGTCCTTTATCAAGAGACCTTGATTCCTCTCGCATAGCATCGTCCAGCAGTGGGGTTGGAAGTTCATCTGAAGAAACTTCAGACTTTGGGACATCAAATAAAAGAAACAGATCAAAACATATTGCCTATGCAGGTGAAGAATCTGATGTAGGAAGGCCCATTACAGGCGAAGAAGAATCAAAGAGCTCCTTGATTGATTTCAGATGTCTCCCCAATGTTGAGAAGATTACGATGCAGGAAGCTTCTGGTAGACCAAATTATCCATATGTTCATGCAAGGTCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTGAAAGATGTTTCGCAATATATGATTGATGCTGCAAAGGAGAATCCTCACTTAGCTCAAAAACTTCACGATGTTTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACTTATTTTCCGAAATTTATCATGGGCAGGTGGGTGCCCCAATTGTTGAGGCTGAAGAAAAAGAAGAATATAAACAGGAAACTCAGGTTGATGACAACCTAGTTCCTGCTCGATTCTTGCCTCCTTTGCCTCACTACAGAGTTCATCCCAAAGCAAGTCGTAGAAGTCAGCTGGAGCATTCTAAGCCTGTAGAAGGTTTAGGGATTAACCTTCCTTTTGATACAAGTGAAGCAACTGGACAGCACTTACCATCACTTGCAGAAGCAACTCCTGTAAAATATGGGAAAAATGTACCATCCGCAGCAGCCGCAGCAGCTGCTGCCGCTGTTGTTGCATCTTCAATGGTAGTTGCTGTGGCAAAGTCAAGCACTAACTCAAATATTGAGCTTCCTGTTGCTGCAGCTGCTACTGCTGCAGCTGTAGTAGCAACCACTGCAGCTGTCAGTAAACAATATGAGCAGGGAAGTCGAAGTGATGGAGATACAGATGCTGCTTTTTATGAACAGAAGGGTAGTACCAGTGGTCATGGAGAGAATAGTGCTTTAGGAGCAAACTCGGAAGGTGAGAGAGTATCTGATAGATCAGTAGGTAATGATAGCACCAAATCTGATTCTGCGCTAGATGATGTTGCCGAGTATGAGATTCCATGGGAGGAAATCAAGCTGGGTGAACGTATTGGACTCGGATCATATGGGGAGGTATACCGTGGTGAATGGCATGGAACCGAAGTAGCTGTAAAGAGGTTTCTGGATCAAGATATCTCTGGTGAATCACTTGAAGAATTCATAAGTGAGGTCCAAATAATGAAAAGACTCAGGCATCCAAATGTTGTTCTCTTCATGGGTGCTGTAATTCGACCTCCAAATCTTTCAATTGTGACAGAATTTCTTCCCAGAGGCAGTTTGTATAGATTAATTCACCGGCCTAACAATCAATTAGATGAGCGAAGGAGACTGAGGATGGCCCTCGATGCTGCTCGAGGAATGAACTATTTGCATAACTGCACTCCAGTGATAGTCCATCGTGATTTAAAATCTCCAAATCTTCTTGTTGACAGAAACTGGGTCGTAAAGGTAAGTGATTTTGGGTTATCACGAATGAAGCATAGTACATTCCTTTCTTCAAGATCAACTGCAGGAACAGCCGAGTGGATGGCTCCAGAAGTATTAAGAAATGAACCTTCCAATGAAAAGTGTGATGTTTATAGCTTTGGCGTCATATTATGGGAGCTCTCTACGTTGCAGCAACCCTGGGGGGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGACTTGAAATTCCAGATAATATGGACCCTGCCATTGCAGATATTATCAGCAAATGCTGGCAAACAGATCCCAAGTTGAGACCCACCTTCGCTGAAATCATGGCCGCTCTGAAGCCATTGCAGAAGCCAATTATTAGTTCTCAAGTGCATAGATCAAGTGCAGCAGGGGGCAGTGGCCATGAGAAGGCTCAGTCCTCACGACACGCACTAGACCCATCAGGATAG 3090 0.4405 MKNILQKLHIMSNQSEDAEGSTSSRGNKSDDGSFPKKLLNSHSSQNSEHKPFSGLSSWLHSVANRQSPSPPYSNLKRGERVEPSDSVSSGGLDIVSDSAMRDSGSGSSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNVLGYDDKISDGFYDLYGILTGSTSTRMPSLVDLQGTPTSDSVTWEAVLVNRAADSNLLKLEQKALELAFKPRLNFEVVVDSNLVQRLATLVADYMGGPVTDPESMTRAWRRLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLSDSVGIPCRLVKGQQYTGSDDVAMNFVKIDDEREYIVDLMADPGTLILSDATESHIEYDESFFVASPLSRDLDSSRIASSSSGVGSSSEETSDFGTSNKRNRSKHIAYAGEESDVGRPITGEEESKSSLIDFRCLPNVEKITMQEASGRPNYPYVHARSPSWTEGISSPAVRRMKVKDVSQYMIDAAKENPHLAQKLHDVLLESGVVAPPNLFSEIYHGQVGAPIVEAEEKEEYKQETQVDDNLVPARFLPPLPHYRVHPKASRRSQLEHSKPVEGLGINLPFDTSEATGQHLPSLAEATPVKYGKNVPSAAAAAAAAAVVASSMVVAVAKSSTNSNIELPVAAAATAAAVVATTAAVSKQYEQGSRSDGDTDAAFYEQKGSTSGHGENSALGANSEGERVSDRSVGNDSTKSDSALDDVAEYEIPWEEIKLGERIGLGSYGEVYRGEWHGTEVAVKRFLDQDISGESLEEFISEVQIMKRLRHPNVVLFMGAVIRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDRNWVVKVSDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLEIPDNMDPAIADIISKCWQTDPKLRPTFAEIMAALKPLQKPIISSQVHRSSAAGGSGHEKAQSSRHALDPSG 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1855 1029 ProSitePatterns Protein kinases ATP-binding region signature. 746 767 IPR017441 GO:0005524
Glsi13g1855 1029 Pfam Protein tyrosine and serine/threonine kinase 740 992 IPR001245 GO:0004672|GO:0006468
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 1 73 - -
Glsi13g1855 1029 CDD STKc_MAP3K-like 746 992 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 687 701 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 386 432 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 672 727 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 405 432 - -
Glsi13g1855 1029 Gene3D Phosphorylase Kinase; domain 1 733 817 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 1 114 - -
Glsi13g1855 1029 ProSiteProfiles Protein kinase domain profile. 740 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1855 1029 PRINTS Tyrosine kinase catalytic domain signature 853 871 IPR001245 GO:0004672|GO:0006468
Glsi13g1855 1029 PRINTS Tyrosine kinase catalytic domain signature 963 985 IPR001245 GO:0004672|GO:0006468
Glsi13g1855 1029 PRINTS Tyrosine kinase catalytic domain signature 814 827 IPR001245 GO:0004672|GO:0006468
Glsi13g1855 1029 PRINTS Tyrosine kinase catalytic domain signature 919 941 IPR001245 GO:0004672|GO:0006468
Glsi13g1855 1029 PRINTS Tyrosine kinase catalytic domain signature 900 910 IPR001245 GO:0004672|GO:0006468
Glsi13g1855 1029 Pfam Ethylene-responsive protein kinase Le-CTR1 154 357 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 1003 1029 - -
Glsi13g1855 1029 FunFam Serine/threonine-protein kinase isoform 1 731 818 - -
Glsi13g1855 1029 Gene3D Transferase(Phosphotransferase) domain 1 819 1004 - -
Glsi13g1855 1029 MobiDBLite consensus disorder prediction 386 404 - -
Glsi13g1855 1029 FunFam Serine/threonine-protein kinase CTR1 819 1002 - -
Glsi13g1855 1029 SUPERFAMILY Protein kinase-like (PK-like) 726 991 IPR011009 -
Glsi13g1855 1029 SMART serkin_6 740 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1855 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 859 871 IPR008271 GO:0004672|GO:0006468
Glsi13g1855 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 137 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1855 Glsi-ChrGlsi13 34335689 34344841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1855 1 1017 MAP Kinase Kinase Kinase AT1G73660 62.934 0.0 1178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi13g1855 PK_Tyr_Ser-Thr 5.8e-68 CL0016