Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1845 ATGGACAACGTTCTTGGCCTTCTAAGGATTCGCGTCAAGCGTGGTGTCAACCTCGCTGTTCGTGATGTTCGCAGCAGCGATCCTTACGTTATCGTTAAGATGGGCAAGCAGAAACTGAAGACCCGCGTAATAAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACGCTATCTATTACGGACTCGAGTCGTCCGGTATTACTGACTGTGTATGACCATGACACATTTAGCAAAGATGACAAAATGGGAAATGCAGAGTTTGACATATCAGCATTTATAGAAGCGTCGAAGATGAACTTAGAAGGACTGCCGAGTGGAACTGTAATTAAAAGAATAGTACCGAGCAGGCAAAACTGTCTGGCGGAGGAGAGCTGCGTTACTTGCAACAATGGCAAGGTTGCCCAAGATATGGTACTGAGACTGCGCAATGTGGAATGTGGGGAAGTAGAAATCCAATTGCAATGGATCAAGCTTCCGGGTACTTAG 489 0.456 MDNVLGLLRIRVKRGVNLAVRDVRSSDPYVIVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDSSRPVLLTVYDHDTFSKDDKMGNAEFDISAFIEASKMNLEGLPSGTVIKRIVPSRQNCLAEESCVTCNNGKVAQDMVLRLRNVECGEVEIQLQWIKLPGT 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1845 162 Gene3D C2 domain 2 162 IPR035892 -
Glsi13g1845 162 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 161 IPR044562 -
Glsi13g1845 162 SMART C2_3c 7 102 IPR000008 -
Glsi13g1845 162 CDD C2_ArfGAP 5 148 - -
Glsi13g1845 162 Pfam C2 domain 6 95 IPR000008 -
Glsi13g1845 162 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Glsi13g1845 162 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 100 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1845 Glsi-ChrGlsi13 34251748 34253134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1845 38 161 C2H2 Transcription Factor Family AT1G70790 60.317 4.27e-50 156