Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1837 ATGGTTGCTGCAGTAACGATTGGTGTAAACCGGAAAGAAGGTGATGGTGGGGATGTCATACCAACCTCTCAGAAGAACGTGGACACGCTGTGCCTGTCAACCGAATACAAAGAAACCTGCCAGAAAAGCGTTGCAAAAGCCTCCACCGAATCCTCTGACATGAAGCAGCTGATTAAAGCCGCCTTTGGCTCCACAGCCGAGGAGATCCAAGCTCAACTCAAGAACTCCGCCCTTTTTGAAGAGCTTGGCAAGGACAACATGACCAAACAGGCTCTTGATGTGTGCAAGGAGGTGTTGGATTATGCGGTAAAGAGTGTGAATGACTCTATCGAGAAGCTGGACAAATTTGATCTCAACAAGATCGGTGAATCCGCCTACGACCTCAAGGTTTGGCTGGAAGCCACCATCACCCACCAACGCACTTGCCTAGACGGTTTTGTGAACGTGAACACGGATGCCGGGAAGAAAATGGCGGAGGTGCTGAAAGTCTCTTTGGAGCTGAGTAACAACGCCCTTGATATTGTGAATGGCTTCTCGGATGCGTTCAAGAGCTTCGACGTGAACGCACTTACGAACAGGAGGCTTTTGTCGGAGGACGGATTCCCTTCGTGGATGAGCCAAGGACAACGACGCCTGATTCAGTTGGGAGGGAAACACCTTAAACCCAACGTAGTTGTGGCTCAGGATGGGAGTGGCAAGTTCAAAACACTAGGTGATGCACTTAAGGCAGTTCCCCCGAACAACGCAAAGCCCTTTGTCATCCACGTCAAGGCCGGTGTGTACAAGGAGCAAGTCATCATTCCCATGAACATGAACTTTATCACAATCGTGGGAGATGGTCCCGAAAAGACCAGGTTCACTGGCAACCTAAACGTTGTGGATGGGACCCAAACTTTCCATTCAGCAACATTCGCCGTGAATGGTAACAACTTTATGGCGGTGAACGTTGGGTTCGAGAACACAGCAGGAGCTGTGAAGCAGCAAGCAGTGGCACTCAGGATCACCGCAGACAAGGCTGTGATCTACAACTGCCATATGGATGGATACCAAGACACCCTCTATGCCAACACTCAGCGCCAGTTCTACCGTGACTGCACCATCTCCGGCACGGTGGACTTCGTGTTCGGCGATGCAGTAGCAGTCTTCCAGAATTGCACCTTCATCGTGAGGAAGCCAATGGATGGGCAGTCATGCATAGTGATTGCGGGTGGCAAAGATAAGGTCGATGGTCCCAGCGCACTGGTGTTCCAGAGCTGCAATTTCATTGCTGATAAATCCTACTTGGAGTGGAATGGCGGGAAGAGCGGTCCCAAGAAGACGTTTCTGGCAAGGCCATGGAGGGCATTTGCAAAGTCTGTGGTCATCGACTCTGAGATTTCTGACATATTTCATGAGGAAGGCTATTTGCCGTTTCTTGGTGAAACCTTCCAAAAAACCTGCACCGCTTATGAGTACAACAACAAGGGTCCAGGTGCTGATGTGTCCAAGAGGGTCAAATGGCCCGGTGTGAAGCCTAAGATCTCTCCTGCAGAGGCTCAGAAGTACTATCCCGGGAAGTTCTTCGAAATCAGTAATGCCGGTGAACGTGATTCGTGGATCGTTTCCGCTGGGGTCCCCTACGCCCTCGGCCCCATGTAA 1638 0.5092 MVAAVTIGVNRKEGDGGDVIPTSQKNVDTLCLSTEYKETCQKSVAKASTESSDMKQLIKAAFGSTAEEIQAQLKNSALFEELGKDNMTKQALDVCKEVLDYAVKSVNDSIEKLDKFDLNKIGESAYDLKVWLEATITHQRTCLDGFVNVNTDAGKKMAEVLKVSLELSNNALDIVNGFSDAFKSFDVNALTNRRLLSEDGFPSWMSQGQRRLIQLGGKHLKPNVVVAQDGSGKFKTLGDALKAVPPNNAKPFVIHVKAGVYKEQVIIPMNMNFITIVGDGPEKTRFTGNLNVVDGTQTFHSATFAVNGNNFMAVNVGFENTAGAVKQQAVALRITADKAVIYNCHMDGYQDTLYANTQRQFYRDCTISGTVDFVFGDAVAVFQNCTFIVRKPMDGQSCIVIAGGKDKVDGPSALVFQSCNFIADKSYLEWNGGKSGPKKTFLARPWRAFAKSVVIDSEISDIFHEEGYLPFLGETFQKTCTAYEYNNKGPGADVSKRVKWPGVKPKISPAEAQKYYPGKFFEISNAGERDSWIVSAGVPYALGPM 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1837 545 SUPERFAMILY Pectin lyase-like 221 522 IPR011050 -
Glsi13g1837 545 FunFam Pectinesterase 4 220 544 - -
Glsi13g1837 545 FunFam Pectinesterase 23 179 - -
Glsi13g1837 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 178 IPR035513 -
Glsi13g1837 545 Pfam Plant invertase/pectin methylesterase inhibitor 26 174 IPR006501 GO:0004857
Glsi13g1837 545 PANTHER PECTINESTERASE 17 533 - -
Glsi13g1837 545 CDD PMEI-like_3 29 179 - -
Glsi13g1837 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 178 IPR035513 -
Glsi13g1837 545 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Glsi13g1837 545 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Glsi13g1837 545 Pfam Pectinesterase 223 521 IPR000070 GO:0030599|GO:0042545
Glsi13g1837 545 Gene3D - 217 543 IPR012334 -
Glsi13g1837 545 SMART PMEI_2 22 174 IPR006501 GO:0004857
Glsi13g1837 545 NCBIfam pectinesterase inhibitor domain 23 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1837 Glsi-ChrGlsi13 34179359 34181073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1837 1 543 Carbohydrate Esterase AT3G05610 41.894 8.11e-163 477