Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1833 ATGGGTAACGCCCAACCCAATCTCAATCAATATGATGCCAAGGGCTATGCCCTCAGCGGCAAGATCATGCTTAGCGCCATTGTCATTTTGTTCTTCGTCGTCATTCTAATGGTTTGCCTCCACCTCTATGCTCGCTGGTTCCTTTTACGCGCTCGCCGCCGCCCTCTCCGCCGCAGTCGTCACCCCCGTCGCTCCCATCTCGTCTTCTACGTCGACCCCGCCACTTCTGCCCTGCCCTCTCGCGGTCTTGATTCTTCTCTGCTTTTGTCTCTTCCTGTCTTCGTCTACTCCTCCGACACCCACCCCGAACCCGTTGAATGCGCTGTCTGCCTCTCCGAGTTCGAAGAGAGCGAAACGGGTCGGGTTTTGCCCAAATGCAACCACACTTTCCATATTGATTGCATCGACATGTGGTTCAAGACCCACTCCACTTGCCCGCTTTGCAGGGCTCCTGTTGAACCCGTACCCGAGGACGACAACCGGCATGAAGTGGTCATCACTGTGTGTGAAACGGGAAGACCTGAACAGGGCTCGAGTTCTGGGATGTGCGCCGATTGTCAACACGAAAAGGAGGAAGAAAACCTTTCTTCGTCGTCTTCGATTGGGTTCAGACGGAAGCCGTCGTCACTGGTGGGTGTGACTGTGGAGGTGCCCAGAAGGAACGAGAGCTTCGGGGACGAGTCGGGTTGCGAGTCGCCGTCGACTCAGTCGTCGTTTAGATCGCCGATGAGTCGTATGCTGTCGTTCAAGAGAATGCTAAGCAGAGACCGAAAAGGAAACCTTTCGCCATCGACTGGTAGTGCGGTGGGATGCAGCTCTGCGATTGAGTCAGAGAAGGAGCAAGGAGGAGGAGACGAGACTCAGTGA 867 0.5536 MGNAQPNLNQYDAKGYALSGKIMLSAIVILFFVVILMVCLHLYARWFLLRARRRPLRRSRHPRRSHLVFYVDPATSALPSRGLDSSLLLSLPVFVYSSDTHPEPVECAVCLSEFEESETGRVLPKCNHTFHIDCIDMWFKTHSTCPLCRAPVEPVPEDDNRHEVVITVCETGRPEQGSSSGMCADCQHEKEEENLSSSSSIGFRRKPSSLVGVTVEVPRRNESFGDESGCESPSTQSSFRSPMSRMLSFKRMLSRDRKGNLSPSTGSAVGCSSAIESEKEQGGGDETQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1833 288 CDD RING-H2_EL5-like 106 149 - -
Glsi13g1833 288 MobiDBLite consensus disorder prediction 258 274 - -
Glsi13g1833 288 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Glsi13g1833 288 SMART ring_2 107 148 IPR001841 -
Glsi13g1833 288 SUPERFAMILY RING/U-box 90 156 - -
Glsi13g1833 288 Pfam Ring finger domain 106 149 IPR001841 -
Glsi13g1833 288 MobiDBLite consensus disorder prediction 227 244 - -
Glsi13g1833 288 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 157 IPR044675 -
Glsi13g1833 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 155 IPR013083 -
Glsi13g1833 288 MobiDBLite consensus disorder prediction 216 288 - -
Glsi13g1833 288 FunFam RING-H2 finger protein ATL3 74 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1833 Glsi-ChrGlsi13 34172707 34173573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1833 5 288 Rapid Response to Elicitors AT3G16720 52.459 1.86e-78 238