Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1812 ATGTCTTCTCCGAATTCGTGGCTCACATCCCTCACATGTTCACCTCCGGCCATGGAATCTTCTTCTCCTGCACAACTTTTACTTAACTGGTTGACGTTCATCTTCCTATCTCCGTGTCCCCAGCGACTGCTGTTTTCGTTCATTGACCTCATCTTCTTGCTAACCCTTTCTGCGTTTTCACTTGTTAAACTCCGTTCTAAACTCATTTCCAATGCCAACTCTAGCTCCTCAATAATTAAACCCCTCCTGCGGGAGAAGGACCCAGATCACAAGGTTACCTTCTGGTTCAATTTTCCTTTCTTTTCAACCATTCTGTTGGCAATAGTTTACACCGTTCTAAGCATCTTAACCTTCACTCGGAGCACTCAGACTTCATGGAAACTGATGGAAGCTCTGTTTCGGGTGTCTCAAGCAATAACCAACGTAGCGGTAGTGCTTGTGATGGTAAATGAGAAGAAGGTTAGAGATACTAAACATCCTTTGCCACTCAGAATCTACGGGGCAGCAAACTTGGTTATTGTTTGCTTATTTTCTGCTTCGGCCATTTGTCGTCTAGTAACCGTTGGCGAAGACAACTTGGAGTTTAATTTGAGAGTCGATGATATATTCTCGATCGCAAATCTTCCACTATCTGTTCTTCTATCAATTATAGCCATGAAAGGATCATCTGGGATTCATGTAGATTTGGATGCGAGCTCCAGAAGGCTTTCGACAGATATGAATTTGAGTCCTTATGCTTTTGCTTCCTTGTTCTCCAAAATACTATGGTTTTGGATGAACCCTCTGCTCAAGAAAGGGTACAAGTCGCCCCTTAAACTTGATGATGTGCCTTCACTTCCTCCGTATTTTCAAGCCGAAAGGATGTCGAAGCTTTTTGACAGGAATTGGCCGAACCCGGAGGAAAATTGCAAGCACCCTGTTGGAATCACATTACTTCGATGCTTCTGGAAACCCATAGCTTGCACTGGCTTTCTGGCACTTATTCGACTTGCAGTTACGTTTGTTGGGCCAATGCTTATCCAAAATTTTGTTGATTACTCCTCCGGAAAAGAAAGCCGTGTCTCCAAAGGACTTGTTTTGATATTGATCCTGCTGCTGGCAAAATCAGTTGAAGTCCTCAGTAGCCACCAATTCAATTTTTACACTCAGAGTCTGGGTATGCTAGTTCGTTCCAGCCTCACCACGGCTTTATACAAGAAGGGCTTGAGATTGTCATGTTCTTCGCGGCAGACTCACGGGGCTGGCCAGATTGTAAATTACATGGCTGTTGATGTTCAGCAGGTCTCTGATATGATGTTGCAGCTGCACTCTCTTTGGCTGGTGCCATTGCAAGTTGCAGCTGCTCTGGTCCTTATCTATACCTATCTTGGCTTATCTACACTTGCAGCCCTGCTTGGAACTGCTGCTTTCTCTACCTTTATATCAATGCGCACCCAAAGTACCAACATTTTCCAGTACAGTATAATGGTGAACCGTGACTTGAGGATGAAGGCAATGACTGATATGCTTAATAATATGCGTGTCATTAAGTTCCAAGCATGGGAGGAGCACTTCGGGGGCAAAATTCGAACTTTTCGTGAATCAGAGTATAATTGGCTTGGCAAGTTCATGTACACTACTGCAACTACCGTGGGGGTTCTGGGGATTGCTCCCACTATGATAACAGTTCTTACCTTTGGAGCGGCAGTTCTTCTGGGTTTCCCTCTTGATGCTGGTGCTGTGTTCACAGTAACTTCAGTGATCAAAATACTGTATGAGCCGGTCAGGAACTTCCCGCAGGCTCTTATCTCAATTTCACAAGCAATCATCTCCCTTGGGAGGTTGGACGGGTTCATGACAAGTAGGGAATTGGATGAAAATTCAGTGGAGAGAGACGAAAATTGTGACAGTAGCATAGCTGTGGAAATAAAAGGGACTTTCTCGTGGGATGATGAAGGTGGGAAGGAATTTCTTGAAGTTCCGGAGCTGGAAATAAAGAAAGGGGCCCTTGCTGCAGTTGTTGGAACTGTTGGATCAGGCAAGTCTTCATTGTTGGCTTCTGTGCTTGGGGAAATGCACAAGATCTCAGGAAAGGTCAGAGTTTGTGGGACAATGGCGTATGTAGCACAGACATCATGGATTCAGAATGCGACCATCGAAGAGAACATACTGTTTGGATTACCAATGGACAGGGAGAAATACAGGGAAGTTATAAGAGTGTGTTGCCTGGAAAAGGATTTTGAAATGCTAGAATTTGGAGACCAGACTGAGATTGGAGAAAGGGGTATAAACCTCAGCGGTGGCCAGAAGCAACGCATACAACTTGCTAGAGCTGTATATCAGGACTGTGACATCTATCTCCTTGACGATATATTTAGTGCCGTTGATGCCCAAACTGGATCATTTATTTTTAAGGAATGCATCATGGGAGCTCTCAAAGACAAGACCATTTTACTTGTCACCCACCAAGTTGACTTCTTGTATAATGTCAACCCTATAGTGGTGATGCGAGATGGGAAGATCGTGCAAAGTGGAAAGTATAATGAACTTGTGGAATCCGGCTTAGATTTTGGCGCACTTGTAGCTGCTCATGAAACCTCCATGGAGCTTGTAGACAGGAGTGATGCATGTGATCAATCTCCAAAAGTGAACCGCATCTCTTCAAGAGAAGGGGAAAGCAGAGGAAAAATGGACTCTCCAGACCAACCTGAGCCTGATAAGGGTACATCAAAGTTGATTGAAAGTGAGGAGAGAGAAACTGGCCAAGTCAATCTTGATGTATATAAACAATATTGCACTAGAGCATATGGGTGGTGGGGAGTAGCAGTAATACTGATAATGTCTATATTGTGGACTGCATCTTTTATGATGGCTGACTACTGGCTAGCCTATGAAACTTCAAAAGATGGTGTCTTTAACCCCACGATATTCATGAGTGTCTACAGTACCCTAGGAGTGATTTCGTGTGTACTGGGAATTACCAGATCATACGTAGTGACACATTGGGGGCTCAAGACAGCTCAGAGCTTCTTTAGTGGATTGCTTCATAGTATTCTGCATGCACCAATGTCATTCTTTGACACCACTCCTTCTGGCAGAATTCTAAGTCGTGTGTCTACTGATCAACTTTTTATCGACATATTAATCCCAATGTTCATGGGAGTGGTATTGTCGATGTGGTTCACATTATTCAGCATCTTATTTATCACATGCCAAAATGCTTGGCAGATGATCTTCCTCCTAATTCCACTGATTTGGCTCAATAACTGGTATCGGAAATATTACCTGTCAACTTCTCGGGAATTGACTCGACTTGATTCTATCACAAAAGCTCCTGTGATTCAACAATTCTCAGAGACCATTACGGGTGTTATAACAATCCGTGGGTTCAGGAAGCAGAGCACATTTTGTGAAGAAAACATTAAGAGGGTCAATGCAAATTTGCGAATGCAATTCCACAACAGTGCATCATATGAATGGCTCGGTTGCCGCTTGGACCTCCTTGGTGTGTTTTTCCTTTGCATGGCCACCACGTTTATGATCTTTTTGCCAAGTGGTATCATTAGGCCAGGATATGTGGGATTGTCTCTATCCAATGGACTGGCTCTCAGCGCGGTCATGTCAGCTTGCATAATTCTCAGTTGCGAAGTTGAGAACAAAATGGTATCGGTTGAGAGAATAAAGCAGTTCACCCATCTCCCATCAGAAGCTCCATGGACAGTCCCTGATGGGCTTCCACCTCAGAATTGGCCCACTCATGGCCATATCAACTTAAATGATTTGAAGGTTCGGTATCGGCGAAATACTCCCCTAATTCTTCAGGGAATCTCTCTTAGCATTGAAGGAGGAGAGAAGATTGGCATTGTGGGACGTACAGGGAGTGGGAAATCAACGCTCATCCAGGTTTTTTTTAGGTTGGTAGAGCCTTCAGCTGGTGAAATAGTCATTGATGGGATCAACATTTGCACCCTGGGCCTTCATGATCTCAGGTCTCGCTTTGGAATTATTCCACAAGACCCTGTCCTTTTTGAAGGGACTGTAAGGAACAACCTTGACCCTCATGGATTGTATTCAGATGAAGATATTTGGAAGAGCCTTGAGCGCTGCCAACTGAAACAGGTGGTGGCTGCAAAGCCTGAGAAACTTGATGCTTCAGTGGTTGATTGCGGAAACAATTGGAGTGTGGGGCAGAGGCAGCTGCTCTGCATGGGAAGGATAATGCTGAAACGCAGCAAAATATTGTTCATGGATGAGGCAACGGCATCTGTTGATTCACAAACTGATGCTGTAATTCAGAATGTCATCCGGGAGGACTTTGCAACCTGTACAATCATCAGTATTGCTCACCGAATACCCACAGTCATGGATTGTGACAGGGTTTTGGTTATAGATGAAGGATTGGCAAAGGAATTTGATAAACCATCGCGTTTGCTTGAAAGGCCCTCACTTTTTGGTGCATTGGTCCAGGAGTACGCCAACAGATCATCTTAA 4470 0.4425 MSSPNSWLTSLTCSPPAMESSSPAQLLLNWLTFIFLSPCPQRLLFSFIDLIFLLTLSAFSLVKLRSKLISNANSSSSIIKPLLREKDPDHKVTFWFNFPFFSTILLAIVYTVLSILTFTRSTQTSWKLMEALFRVSQAITNVAVVLVMVNEKKVRDTKHPLPLRIYGAANLVIVCLFSASAICRLVTVGEDNLEFNLRVDDIFSIANLPLSVLLSIIAMKGSSGIHVDLDASSRRLSTDMNLSPYAFASLFSKILWFWMNPLLKKGYKSPLKLDDVPSLPPYFQAERMSKLFDRNWPNPEENCKHPVGITLLRCFWKPIACTGFLALIRLAVTFVGPMLIQNFVDYSSGKESRVSKGLVLILILLLAKSVEVLSSHQFNFYTQSLGMLVRSSLTTALYKKGLRLSCSSRQTHGAGQIVNYMAVDVQQVSDMMLQLHSLWLVPLQVAAALVLIYTYLGLSTLAALLGTAAFSTFISMRTQSTNIFQYSIMVNRDLRMKAMTDMLNNMRVIKFQAWEEHFGGKIRTFRESEYNWLGKFMYTTATTVGVLGIAPTMITVLTFGAAVLLGFPLDAGAVFTVTSVIKILYEPVRNFPQALISISQAIISLGRLDGFMTSRELDENSVERDENCDSSIAVEIKGTFSWDDEGGKEFLEVPELEIKKGALAAVVGTVGSGKSSLLASVLGEMHKISGKVRVCGTMAYVAQTSWIQNATIEENILFGLPMDREKYREVIRVCCLEKDFEMLEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDIFSAVDAQTGSFIFKECIMGALKDKTILLVTHQVDFLYNVNPIVVMRDGKIVQSGKYNELVESGLDFGALVAAHETSMELVDRSDACDQSPKVNRISSREGESRGKMDSPDQPEPDKGTSKLIESEERETGQVNLDVYKQYCTRAYGWWGVAVILIMSILWTASFMMADYWLAYETSKDGVFNPTIFMSVYSTLGVISCVLGITRSYVVTHWGLKTAQSFFSGLLHSILHAPMSFFDTTPSGRILSRVSTDQLFIDILIPMFMGVVLSMWFTLFSILFITCQNAWQMIFLLIPLIWLNNWYRKYYLSTSRELTRLDSITKAPVIQQFSETITGVITIRGFRKQSTFCEENIKRVNANLRMQFHNSASYEWLGCRLDLLGVFFLCMATTFMIFLPSGIIRPGYVGLSLSNGLALSAVMSACIILSCEVENKMVSVERIKQFTHLPSEAPWTVPDGLPPQNWPTHGHINLNDLKVRYRRNTPLILQGISLSIEGGEKIGIVGRTGSGKSTLIQVFFRLVEPSAGEIVIDGINICTLGLHDLRSRFGIIPQDPVLFEGTVRNNLDPHGLYSDEDIWKSLERCQLKQVVAAKPEKLDASVVDCGNNWSVGQRQLLCMGRIMLKRSKILFMDEATASVDSQTDAVIQNVIREDFATCTIISIAHRIPTVMDCDRVLVIDEGLAKEFDKPSRLLERPSLFGALVQEYANRSS 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1812 1489 CDD ABC_6TM_ABCC_D1 321 608 IPR044746 GO:0140359
Glsi13g1812 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 851 IPR027417 -
Glsi13g1812 1489 MobiDBLite consensus disorder prediction 865 910 - -
Glsi13g1812 1489 Gene3D - 614 880 IPR027417 -
Glsi13g1812 1489 FunFam ABC transporter C family member 3 1232 1483 - -
Glsi13g1812 1489 SMART AAA_5 1275 1459 IPR003593 GO:0016887
Glsi13g1812 1489 SMART AAA_5 660 833 IPR003593 GO:0016887
Glsi13g1812 1489 CDD ABCC_MRP_domain2 1247 1467 - -
Glsi13g1812 1489 FunFam ABC transporter C family member 10 304 616 - -
Glsi13g1812 1489 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524|GO:0016887
Glsi13g1812 1489 SUPERFAMILY ABC transporter transmembrane region 931 1235 IPR036640 GO:0005524|GO:0016020
Glsi13g1812 1489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1249 1483 IPR003439 GO:0005524
Glsi13g1812 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1242 1482 IPR027417 -
Glsi13g1812 1489 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 247 1484 - -
Glsi13g1812 1489 Pfam ABC transporter 655 783 IPR003439 GO:0005524
Glsi13g1812 1489 CDD ABCC_MRP_domain1 632 833 - -
Glsi13g1812 1489 FunFam ABC transporter C family member 4 617 875 - -
Glsi13g1812 1489 CDD ABC_6TM_ABCC_D2 934 1224 IPR044726 GO:0140359
Glsi13g1812 1489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 600 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi13g1812 1489 Pfam ABC transporter transmembrane region 322 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi13g1812 1489 Pfam ABC transporter transmembrane region 961 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi13g1812 1489 Pfam ABC transporter 1266 1414 IPR003439 GO:0005524
Glsi13g1812 1489 FunFam ABC transporter C family member 5 898 1230 - -
Glsi13g1812 1489 Gene3D ABC transporter type 1, transmembrane domain 899 1230 IPR036640 GO:0005524|GO:0016020
Glsi13g1812 1489 Gene3D ABC transporter type 1, transmembrane domain 309 613 IPR036640 GO:0005524|GO:0016020
Glsi13g1812 1489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 634 856 IPR003439 GO:0005524
Glsi13g1812 1489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 935 1212 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi13g1812 1489 SUPERFAMILY ABC transporter transmembrane region 310 613 IPR036640 GO:0005524|GO:0016020
Glsi13g1812 1489 Gene3D - 1235 1481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1812 Glsi-ChrGlsi13 33995051 34000917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1812 634 881 Calmodulin-binding Proteins AT2G36910 30.112 4.47e-23 105