Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1783 ATGGAGATGGATTACGTGACAGAGTTTCCTCACTCTCACATGGATCGCCGTCCCAGGAAAAGGGCAAAATTAGCTTGGGAATTGCCTCAAACACACTCCAAGGGTCATTCGGGGATGTATTATGGACAAGAGATTGCAAATATGGCAAGCTTTGGAACATCAAGGATATTTCCCGAACATGCTGGCATAGTTGTGAAGGGGTTGGCTGAAAAAGGTTCTCCCCCATGGCGTGATGATGACAAAGATGGACATTACATATTTGCGCTTGGAGACAATTTAACTTCTCGGTATAAGATCCTCAGAAAAATTGGCGAAGGTACTTTTGGTCAGGTTCTGGAATGTTGGGATAGAGAACTGAGGGAGCTGGTTGCAATAAAAGTTGTGCGAAGTATTAAAAAATATCGTGAAGCAGCAATGGTAGAAGTTGATGTGCTTCAGTTGCTTGGGAAGTATGACAAGAATGGCAGTCGGTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTGTTTTTGAGATGCTTGGACCAAGCTTATATGATTTTCTTCGGAAGAACAATTATCGCCCATTTCCTGTTGATCTTGTCCGTGAGCTAGGCAGGCAACTGTTGGAATGTGTTGCATTCATGCATGATTTGCGCCTCATCCACACTGACTTGAAACCTGAGAACGTACTTTTTGTTTCCCCAGAATATGTAAAAATACCTGACTACAAGGCTACATCCCTGTCCCCAAAAGAGGGAACCTTTTATAAGAGATTGCCAAAGTCAAGTGCTATTAAGGTCATTGATTTTGGGAGCACAGCCTATGAGCACCAAGATCACAACTACATTGTTTCTACTAGGCATTATCGGGCACCTGAGGTTATTCTTGGACTTGGGTGGAGTTTCCCTTGTGACATATGGAGTGTTGGTTGCATTTTGGTTGAGTTATGCTCGGGAGAGGCTTTGTTCCAGACGCATGAGAATTTAGAGCACTTGGCCATGATGGAGAGGGTTTTAGGCCCAATGCCTATGCACATGTTGAAAAAAGCGGACCGGCATGCAGAGAAGTATGTCAGAAGGGGTAGACTGAACTGGCCAGAAGGTGCAGTCTCTCGAGAAAGCATCAAGGCTGTCTTGAAACTACCTCGTCTTCCTAATCTGGTGATGCAACACGTGGATCACTCTGCAGGGGATCTTATTGACCTCTTGCAAGGCCTACTTCGGTTTGACCCTTCCAGTAGACTTACAGCTCATGAAGCGCTCAGGCATCCATTCTTCACGAAGGAGCATTACAGGAGATTTTGA 1299 0.4457 MEMDYVTEFPHSHMDRRPRKRAKLAWELPQTHSKGHSGMYYGQEIANMASFGTSRIFPEHAGIVVKGLAEKGSPPWRDDDKDGHYIFALGDNLTSRYKILRKIGEGTFGQVLECWDRELRELVAIKVVRSIKKYREAAMVEVDVLQLLGKYDKNGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLECVAFMHDLRLIHTDLKPENVLFVSPEYVKIPDYKATSLSPKEGTFYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWSFPCDIWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPMPMHMLKKADRHAEKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLIDLLQGLLRFDPSSRLTAHEALRHPFFTKEHYRRF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1783 432 SMART serkin_6 97 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1783 432 SUPERFAMILY Protein kinase-like (PK-like) 84 428 IPR011009 -
Glsi13g1783 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Glsi13g1783 432 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Glsi13g1783 432 Pfam Protein kinase domain 97 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1783 432 ProSiteProfiles Protein kinase domain profile. 97 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1783 432 ProSitePatterns Protein kinases ATP-binding region signature. 103 133 IPR017441 GO:0005524
Glsi13g1783 432 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 427 - -
Glsi13g1783 432 CDD PKc_CLK 84 424 - -
Glsi13g1783 432 FunFam Serine/threonine-protein kinase AFC2 173 424 - -
Glsi13g1783 432 Gene3D Transferase(Phosphotransferase) domain 1 151 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1783 Glsi-ChrGlsi13 33834750 33840233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1783 82 428 MAP Kinase Gene Family AT3G59790 27.624 3.92e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Glsi13g1783 Pkinase 4.9e-49 CL0016