Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1780 ATGTTGGGGGAAGAGGGTAAGGGCCGGCCTCCCGCCGCCGGTGGTGGTCGAAGAACGTTTTCGCGTTCGGTTTCTTGGACTGATCGGTCTCCCACTAAAACTAGCCCCAACCGTAGGCCACCAACAAATAGTAAGCCTCGGCCGTGTTTGCCACCCCTTCAGCCCCTCTCCATCAGCAGGCGGAGTGCCGAGGAGTGGCCGAGTGCGGGATCTGATGATCTTGGAATCTGGCCCCTTCCGCAAACGCCCAGAGGGTCAATCAAAGGCTTGGAGAGTTCTGACTCGGGCCAACCCACTAAAGAATTTCAGTTCAAGAGGGATAAATTAGCCTTTTTTGATAAGGAATGCTCCAGAATTGCGGAGCATATATACTTGGGCAGTGATACAGTTGCGAAGAATCATGAGCTTTTGAGGCAGAATGGGATCACTCATGTCCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAAAGCGATTTTGTGTACAAGACACTTTGGTTGCAGGACAGCCCAACTGAGGATATTACCAGTATTCTCTACGATGTCTTTGATTACTTTGAAGATGTTCGAGAGCAAGGCGGGCGTGTCCTTGTGCATTGTTGCCAGGGAGTTTCTCGATCCACCTCTCTGGTCATTGCATATCTCATGTGGAGGGAGGGACAGAGCTTTGAAGATGCGTTTCAGTATGTGAAGACTGCACGAGGAGTGACTAACCCAAATATGGGCTTTGCTTGTCAACTTCTCCAGTGTCAGAAACGGGTACATGCTATGCCCGCCAGCCCAAATTCTATTCGTAGGATGTATCGTATGGCCCCTCACTCGCCCTATGACCCTCTTCATCTGGTGCCCAAAATGATAAATCATCCAGGTGCACGAGCACTTGATTCTCGTGGGGCGTTCATTATCCATGTTCCTTCGGCTATATATGTCTGGAATGGAAAAAATTGTAATTCGGTGATGTCATGTAATGCACAGGCAGCAGCCTATCAGGTCATCCGTTACGAGCAGGCAAAGGGTCCCATTCTGAGCATTGACGAAGGTGAAGAACCATCGGAGTTTTGGGTTGCTCTTTCCGACCAGCAGCTCATGTCAAGTGGTTTTGACGAAGCAGAGGTCAAGAAGGAAAGCATGGAGGTTGCCGAAGCAGGAAGAAGAAAAGTTGGTGAGTATGATTTGGATTTTGAGATCTTCCACAAGGCGCTTGCTGGTGGGGTTGTTCCGCCTTTTTCGGTAGCTAATGCGGGATCAGAAACTTGCCTCCCTGCTAGAGGAAACGGTTGGGGAAGATTGAGGCGGAAATTTGCCAGTGGTATCATGAAAGGATTGTTCACATCCTCCAAATGGAACTGTGATAGTGCCTCCTCCACAGACGGGGCGAGGGTGATAGTGGACGACAATCAACATTCTGTACTTGATCCTTTGTCACCAATATCATCAACCCATCCCTGTGGTTCTCCGGATTCCTTTGAATGTTTTCCAAGTAACAGTCCAGACAGGGCAAAGGATCCTGATGGCATGGAACTTTCTCCTCCTGCCTCATCGGATTCCTTTTCTTGTTTTCTAGGCTGCAGCGCAAAATTCAGTTCCAAGTCCCCAACACTCTCACCCTCCAGTTCTGATTATGCCAGTTCATTTACATTTTCACCTTCGTCTACAAATTGGTCCGACTTGTCATTTGTATCTTCTCGGCAACCATCACCTTCTAGCGTGGAACAAACTGAACCTTTCTATGTTAAAGATCTGTCTTTCTCAGAAAGCTCCACTTTACTTCACAAAGAAGCTGATTTCCCGCCTTCGGAGGCATTTTCTGCTAATCACACATTGGGAGGGGCAAGCACCTTTTTGCCATGTAAAGGATCTTCCCCCTCCATTGCAGAGCGCAGAGGGAGTAATCCACCACCTCTTATGTTGCTACCCTCGGTCAACGAATCATCTCATGACCTCACGAACCTGGTAAGATCACAATCATTCTCTTTACCTGACTTAGATGATTATGTCATGAAGGATGTTAGTTGCAAGCAATCTGAACATGAAAACAATGGAAAAGAGCTCATACGAGGGAATGAGAATAATGACAGAAGGTTTATGTGA 2094 0.4776 MLGEEGKGRPPAAGGGRRTFSRSVSWTDRSPTKTSPNRRPPTNSKPRPCLPPLQPLSISRRSAEEWPSAGSDDLGIWPLPQTPRGSIKGLESSDSGQPTKEFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSIRRMYRMAPHSPYDPLHLVPKMINHPGARALDSRGAFIIHVPSAIYVWNGKNCNSVMSCNAQAAAYQVIRYEQAKGPILSIDEGEEPSEFWVALSDQQLMSSGFDEAEVKKESMEVAEAGRRKVGEYDLDFEIFHKALAGGVVPPFSVANAGSETCLPARGNGWGRLRRKFASGIMKGLFTSSKWNCDSASSTDGARVIVDDNQHSVLDPLSPISSTHPCGSPDSFECFPSNSPDRAKDPDGMELSPPASSDSFSCFLGCSAKFSSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSSVEQTEPFYVKDLSFSESSTLLHKEADFPPSEAFSANHTLGGASTFLPCKGSSPSIAERRGSNPPPLMLLPSVNESSHDLTNLVRSQSFSLPDLDDYVMKDVSCKQSEHENNGKELIRGNENNDRRFM 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1780 697 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 257 IPR020422 GO:0006470|GO:0008138
Glsi13g1780 697 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 235 IPR000387 GO:0016311|GO:0016791
Glsi13g1780 697 Pfam Dual specificity phosphatase, catalytic domain 123 253 IPR000340 GO:0008138|GO:0016311
Glsi13g1780 697 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 106 257 IPR029021 -
Glsi13g1780 697 SMART dsp_5 115 254 IPR020422 GO:0006470|GO:0008138
Glsi13g1780 697 MobiDBLite consensus disorder prediction 20 40 - -
Glsi13g1780 697 SUPERFAMILY Actin depolymerizing proteins 261 363 - -
Glsi13g1780 697 MobiDBLite consensus disorder prediction 675 697 - -
Glsi13g1780 697 Gene3D Protein tyrosine phosphatase superfamily 91 257 IPR029021 -
Glsi13g1780 697 ProSitePatterns Tyrosine specific protein phosphatases active site. 199 209 IPR016130 GO:0016311|GO:0016791
Glsi13g1780 697 CDD DSP 116 250 - -
Glsi13g1780 697 PANTHER MKPA PROTEIN 14 647 - -
Glsi13g1780 697 MobiDBLite consensus disorder prediction 493 512 - -
Glsi13g1780 697 Gene3D Severin 268 366 IPR029006 -
Glsi13g1780 697 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1780 Glsi-ChrGlsi13 33827746 33829839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1780 1 151 Protein tyrosine phosphatase (PTP) family AT3G55270 44.865 1.85e-36 144