Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1770 ATGGAGGCAGAGTCGGAGACAGAGAGGAGGTACAAGTATGTGAGATGGAGGAGTGGGTGGGAGAGGGTGGAGTGCTGCGTGTGTCTGTGTGGGTTTGAAGGGAGTGAGGAGGTGACCCAGTTGTCTTGCAACCATTTCTTCCATAAAGCTTGCTTAGACAAGTGGTTTCATTACAAACACACCACCTGCCCTCTCTGTCGTTCCATATATTAG 213 0.5023 MEAESETERRYKYVRWRSGWERVECCVCLCGFEGSEEVTQLSCNHFFHKACLDKWFHYKHTTCPLCRSIY 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1770 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Glsi13g1770 70 SUPERFAMILY RING/U-box 19 70 - -
Glsi13g1770 70 ProSiteProfiles Zinc finger RING-type profile. 25 67 IPR001841 -
Glsi13g1770 70 PANTHER - 9 69 IPR044249 -
Glsi13g1770 70 SMART ringv_2 24 67 IPR011016 GO:0008270
Glsi13g1770 70 SMART ring_2 25 66 IPR001841 -
Glsi13g1770 70 Pfam Ring finger domain 24 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1770 Glsi-ChrGlsi13 33788181 33788393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1770 24 68 C3H Transcription Factor Family AT2G04240 55.556 2.34e-14 61.6