Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1760 ATGACCATCTGTCCATCAACAGAGGAACACAGTCCGAGGAACAACCGTGGGTATGGGAGAGAGTTCCAGTCCATGTTGGAGGGACTAGATGAGGAAGGGTGTGTCGAAGAACTAGGCCATCCCTCTGAGAAGAAACGCCGACTAAGTGTCGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTAGAAAACAAGCTTGAGCCCGAGAGGAAGGTGAAGCTTGCCCAAGAACTTGGATTGCAGCCTCGACAAGTGGCCGTGTGGTTCCAAAACCGTCGAGCTAGGTGGAAAACCAAGCAACTGGAGAGAGACTATGGCGTTCTTAAAGCCAATTATGAAGCTCTCAAACTTAACTACGAAGCCCTTCAACAGGACAATGGAGCCTTGCTCGAAGAGATTAAGGAATTGAAATCAAGATTGCAAGAGGAGAACACTGAAAGCGATGTTTCAGTGAAGGAAGAGATAGCCCTGCCGGACACGGACGACAAAATGATCGGAGTGAGTTTGCCACCTTCTGAAACATCCATTCCTGGAGCAGAGCCAAAAGACTTGAATTATGACTGCTTCAACCGAAACGCTGGCGTCGGTGGCGCCTCACTCGTCCCAGCAGACTTCAAAGACGGCGCTTCCGATAGCGACTCTAGCGCAATCTTCAACGAAGATAACAGCTCCTCACCTGGTGTTCTTCAAAGTCACCAGCTTTTGATGTCTCCTGGCTCTTCTTCCCTCAATTTCAATTGTTCTTCATCGTCCTCCCCCTCGTCCATGAACTGCTTTCAGTTCCAGAAAACGTACCAGACTCAATATGTGAAGATGGAAGAGCATAATTTCTTCAGCGCAGAAGAGGCCTGCAATTTCTTCCCCGATGAGCAGGCACCAACCCTCCAGTGGTATTGGAGTTAA 903 0.4884 MTICPSTEEHSPRNNRGYGREFQSMLEGLDEEGCVEELGHPSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNYEALQQDNGALLEEIKELKSRLQEENTESDVSVKEEIALPDTDDKMIGVSLPPSETSIPGAEPKDLNYDCFNRNAGVGGASLVPADFKDGASDSDSSAIFNEDNSSSPGVLQSHQLLMSPGSSSLNFNCSSSSSPSSMNCFQFQKTYQTQYVKMEEHNFFSAEEACNFFPDEQAPTLQWYWS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1760 300 CDD homeodomain 44 100 IPR001356 GO:0003677
Glsi13g1760 300 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Glsi13g1760 300 FunFam Homeobox-leucine zipper protein HAT5 37 101 - -
Glsi13g1760 300 SMART HOX_1 42 103 IPR001356 GO:0003677
Glsi13g1760 300 Coils Coil 98 146 - -
Glsi13g1760 300 MobiDBLite consensus disorder prediction 212 232 - -
Glsi13g1760 300 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Glsi13g1760 300 SUPERFAMILY Homeodomain-like 30 101 IPR009057 -
Glsi13g1760 300 Pfam Homeodomain 44 97 IPR001356 GO:0003677
Glsi13g1760 300 MobiDBLite consensus disorder prediction 211 232 - -
Glsi13g1760 300 Gene3D - 39 106 - -
Glsi13g1760 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 299 IPR045224 GO:0003700
Glsi13g1760 300 Pfam Homeobox associated leucine zipper 99 141 IPR003106 GO:0006355|GO:0043565
Glsi13g1760 300 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Glsi13g1760 300 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1760 Glsi-ChrGlsi13 33748253 33749520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1760 1 298 Homeobox Transcription Factor Family AT2G22430 47.239 7.89e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi13g1760 Homeodomain 2.4e-16 CL0123