Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1753 ATGGAACGGTACGATATTATCAAAGATATTGGGTCAGGCAAATTTGGAGTTGCAAAGCTGGTGAGGGAGAAACGGAGCGGTGACTTGTACGCTATCAAGTTTATTGAGAGAGGCCTGAAGATTGACGAGCATGTGCAAAGGGAGATTATAAACCATAGGTCCTTGAAGCATCCCAATATCATTAGATTTAAAGAGGTATTGCTGACTCCGACTCATCTTGCCATAGTCATGGAATATGCTGCAGGGGGAGAACTATTTGAAAGAATATGCAGTGCGGGTAGATTCAGTGAGGACGAGGCAGGATATTTCTTTCAGCAGTTGATTTCTGGAGTCAGCTATTGCCATTCGATGGAAATTTGCCACAGAGATCTTAAGCTGGAAAACACGCTTTTAGATGGAAGCTCAGCACCACGACTCAAAGTTTGCGACTTTGGTTATTCAAAGTCATCTGTTCTGCACTCCCAGCCCAAATCTACCGTAGGAACCCCTGCCTATATTGCACCAGAGGTCTTGTCTAGAAGGGAATATGATGGCAAGGTTGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGCTGGTTGGTGCTTATCCTTTTGAAGATCCAGAAGATCCTAGAAACTTCAGAAAAACACTTCAGCGAATTCTCAGTGTCGACTATTCTGTTCCAGACTATGTTCGTATTTCAAAAGAGTGTAAGCACCTTTTGTCTCGGATTTTTGTGGCGAATCCGGAGAAGAGAATTACCATCCCAGAAATTAAAATGCACCAGTGGTTCCTGAAGAACTTGCCACTAGAATTTAAGGACGAAGGGGAAGAAGGTGGGTTGCAAGAAGATGATGTGAATGATTCATCTGAGAGGCAGAGCATAGAAGAAATACTGTCCATAATTCAAGAAGCTCGGAAGGCAGGAGAGGGCCCAAAATTTGGTGGGCAGTTTGTTGGGGGAAGCATGGATCTTGATGAGATAGATGCAGATGCTGACATTGACGATATAGAGACAAGCGGCGATTTTGTCTGTGCATTTTTTGCAGAGTGCAGGCCGTTAAGCAGCACGATGGGCGGGGGCGGGAGAGGAGGAAAAGGAGGCAGGCCTCGCACTCAAAGAAGAGATTTCCAGCAGAGCAGGGAGAATGTTTGGAAGCATCCAAAATCTTATCCTCCTTCCGGAAACGCAGACGAAAATCCTACTTGGACTCCCTTCACCACTCAAAACTCTGCTTTCGATGAGTATTACAAGGACCAAATGATAGTGACTTCTGAAGAGTGGGATGCATTCGTAGGAGTTCTCAGAACTCCACTGCCTGCAACCTTTCGAATCAATTCCAGTAGCCAGTTTTCTGCAGACATTCGGTTGCAATTGGAGAATGACTATGCGAAATCTCTTCAGGCTGAGGCTGTTGAAGGGGGTGAGTCAGAGGCTATTAGACCTTTGTTGTGGTACCCCAAAAATCTTGCTTGGCATACAAACTTCTCTCGTATGCAGTTGAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTACCTCCCCTCTTCTTGGATGTACATGCAAAACATTTTGTACTTGACATGTGCGCTGCACCTGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCATGTAAAGCTGGATCACTACCTGATGGAATGGTAATAGCAAATGATGTTGATGTCCAAAGATGTAATCTTCTCATTCATCAAACAAAACGAATGTGCACAGCCAACCTAATTGTCACTAATCACGAAGCTCAGCATTTCCCAGGATGCTCTTTAAACAGACATCATGATACAATGGAACCAAATAAGCATATTAGCCAACTTTTATTTGATCGTGTTCTGTGTGATGTACCGTGCAGTGGAGATGGTACCCTTCGTAAGGCACCTGATCTCTGGAGGAAATGGAACACAGGGATGGGCAACGGGCTTCATAACCTACAAGTCCTAATAGCTATGCGAGGTCTATCATTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACCTGCTCAATGAACCCTATTGAGAATGAAGCTGTGGTTGCAGAGATTTTACGGAGGTGTGCAGGGTCTGTTGAACTTGTTGATGTCTCTCATGAGCTCCCTCAACTTATTCGCCGGCCAGGTCTCAAGAGATGGAAGGTACATGACAAGGGCACATGGCTGGTGTCTTACAAAGATGTCCCCAAGTCTCGCAAAAGTGTAGTTCTTCCCAGCATGTTTCCTTCTGGCAGAAGCCATCAGGATATTGTCGACTGTAATCTTAATGTAGACACACAACATGATATTAATAATGGTGTTAATGGAAGTTCTGAAGTTGGTAATCAAGCAGTGGAGAATTCTTTGACACATGAATTTTCTGAGGAAGTTTCTAATTTCCCACTAGAGCATTGCGTGAGGATAGTGCCTCATGATCAAAACACTGGAGCCTTCTTTATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCTGCAATTCAGGATAAACCTAAAAAAGGAATTGCTAGGAAACATGTAAAACCAGCAAACCAGGGTATTGAGGATAAACAAGTATTGCAGGTTGATTCATTAGAAAGTAAATATGAGGAAGTTTTGGAAACAGTTTCGGAGGTTGATTTAAATGAACATGAATCCAATGGTGTAGGTTCGGAAGTTAGTCCTTTTTCACATAAAGAGTGGGCTTCAGAGGAAGCGCAAGAGCCCCACAATGCAGAAAGCATAGCAAAGATGACTCAAGTAAAAAGAAAGCTTCAGATTCAAGGCAAGTGGAGAGGTGTTGACCCTGTTGTCTTCTTTAAAGATGAAGCCATTATTAACAGCATAAAGGCATTCTATGGTATTGATGAGCAGTTTCCATTTGATGGTCATCTACTTTCGAGAAACAGTGATACAAATCGTGTGAAAAGAATTTACTATGTCTCCCAGTCAGTCAAGGATGTTCTTGAACTGAATTTCTCTGTGGGGCAGCAACTTAAAATTACATCCATTGGCCTGAAGATGTTTGAAAGACAAACATCGCGAGAAGGTAGCTCTGCACCATGTTCTTTCCGGATATCATCTGAAGGATTGCCCCTAATTCTCCCGTACATAACCAAACAGATTCTGCGGGCATCTCCTGTAGATTTCAAGCATCTTCTGCAGTCTAAAGCTGTAAAATTTGCAGATTTTTTTTATGCTGAGTTTGGTGAAAAGGCAGCTAACCTTAAGCCAGGATGTTGTGTGGTAGTTCTGGGTAAAGGGAACAGAGCTGATTTAGAGTCCTCCCATGTGGATGAGTCAACCATAGCCATTGGATGCTGGAAGGGTAGGGCCAGTTTGACAGTGATGGTTACTGCAATCGATTGCCAAGAACTGCTTGAAAGGCTTCTAATGCGTCTAGACACAGAACATGGCTCCTCTGTGCTTTCAGACAAGCACTCCATTTATGTAGGAGATGAAGTAGAGGACTTGACTGGCAAAAATGATTATGTGGAAGCTACTGGGAGCTTATAG 3549 0.4308 MERYDIIKDIGSGKFGVAKLVREKRSGDLYAIKFIERGLKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEAGYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKVCDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVDYSVPDYVRISKECKHLLSRIFVANPEKRITIPEIKMHQWFLKNLPLEFKDEGEEGGLQEDDVNDSSERQSIEEILSIIQEARKAGEGPKFGGQFVGGSMDLDEIDADADIDDIETSGDFVCAFFAECRPLSSTMGGGGRGGKGGRPRTQRRDFQQSRENVWKHPKSYPPSGNADENPTWTPFTTQNSAFDEYYKDQMIVTSEEWDAFVGVLRTPLPATFRINSSSQFSADIRLQLENDYAKSLQAEAVEGGESEAIRPLLWYPKNLAWHTNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHAKHFVLDMCAAPGSKTFQLLEIIHQSCKAGSLPDGMVIANDVDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCSLNRHHDTMEPNKHISQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGNGLHNLQVLIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEILRRCAGSVELVDVSHELPQLIRRPGLKRWKVHDKGTWLVSYKDVPKSRKSVVLPSMFPSGRSHQDIVDCNLNVDTQHDINNGVNGSSEVGNQAVENSLTHEFSEEVSNFPLEHCVRIVPHDQNTGAFFIAVLQKVSPLPAIQDKPKKGIARKHVKPANQGIEDKQVLQVDSLESKYEEVLETVSEVDLNEHESNGVGSEVSPFSHKEWASEEAQEPHNAESIAKMTQVKRKLQIQGKWRGVDPVVFFKDEAIINSIKAFYGIDEQFPFDGHLLSRNSDTNRVKRIYYVSQSVKDVLELNFSVGQQLKITSIGLKMFERQTSREGSSAPCSFRISSEGLPLILPYITKQILRASPVDFKHLLQSKAVKFADFFYAEFGEKAANLKPGCCVVVLGKGNRADLESSHVDESTIAIGCWKGRASLTVMVTAIDCQELLERLLMRLDTEHGSSVLSDKHSIYVGDEVEDLTGKNDYVEATGSL 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1753 1182 Gene3D Vaccinia Virus protein VP39 402 749 IPR029063 -
Glsi13g1753 1182 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Glsi13g1753 1182 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1753 1182 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 404 746 - -
Glsi13g1753 1182 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 369 1149 IPR023267 GO:0001510
Glsi13g1753 1182 Pfam 16S rRNA methyltransferase RsmB/F 532 717 IPR001678 GO:0008168
Glsi13g1753 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Glsi13g1753 1182 SUPERFAMILY Protein kinase-like (PK-like) 2 265 IPR011009 -
Glsi13g1753 1182 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1753 1182 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1753 1182 MobiDBLite consensus disorder prediction 352 401 - -
Glsi13g1753 1182 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Glsi13g1753 1182 ProSitePatterns NOL1/NOP2/sun family signature. 631 642 IPR018314 GO:0003723|GO:0008168
Glsi13g1753 1182 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 427 839 IPR001678 GO:0008168
Glsi13g1753 1182 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 406 839 IPR029063 -
Glsi13g1753 1182 CDD STKc_SnRK2 3 259 - -
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 1010 1022 IPR023270 GO:0016428
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 488 509 IPR023270 GO:0016428
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 716 735 IPR023270 GO:0016428
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase signature 682 698 IPR023267 GO:0001510
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase signature 632 644 IPR023267 GO:0001510
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase signature 821 838 IPR023267 GO:0001510
Glsi13g1753 1182 PRINTS RNA (C5-cytosine) methyltransferase signature 542 552 IPR023267 GO:0001510
Glsi13g1753 1182 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Glsi13g1753 1182 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Glsi13g1753 1182 MobiDBLite consensus disorder prediction 365 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1753 Glsi-ChrGlsi13 33687537 33703637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1753 3 270 CBL-interacting serine-threonine protein kinases AT4G24400 42.086 3.51e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Glsi13g1753 Pkinase 8e-69 CL0016