Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1751 ATGGATGAGGAAGAGCACGAGGTATACGGAGGCGAGATCCCAGACGTTGGAGAGATGGAAGGGGATTTGGACTCTCATCATGCCGACTTCGACATGTCAGTCGCCGACGATGACGCTGTCAAGGAGCTGGACGAGATGAAGAAGCGATTGAAGGAAATGGAAGAGGAGGCCGCAGCTCTCCGTGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGCGCCGTTCAAGATCCTGCTAGTGCAGCTGCTTCTCAGGCAAGCAAGGAGGAGGCAGATTTGCGATCAGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTCCAATCATGTGGTACGGTGAACAGGGTTACTATCCTGACTGATAAGTTTGGCCAACCTAAGGGTTTTGCTTATGTGGAATTCCTTGAACCTGAAGCTGTTCAAGAGGCTCTTGTCTTGAATGAATCTGAATTGCATGGCCGTCAGTTGAAGGTTTTGCTTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTCGGCGATTCAATCCTCACATGGCATACCGCTTCAGGAGGCCATATCCCCCTCCTTACTTTTACTCCCCATATGGATATGGGAAGGCTCCCAGGTTTAGAAGGCCCACTCGATACATGCCCTACTATTAG 666 0.494 MDEEEHEVYGGEIPDVGEMEGDLDSHHADFDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQASKEEADLRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEPEAVQEALVLNESELHGRQLKVLLKRTNVPGMKQYRPRRFNPHMAYRFRRPYPPPYFYSPYGYGKAPRFRRPTRYMPYY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1751 221 SMART rrm1_1 94 165 IPR000504 GO:0003723
Glsi13g1751 221 CDD RRM_II_PABPs 94 165 - -
Glsi13g1751 221 FunFam Polyadenylate-binding protein 1 32 165 - -
Glsi13g1751 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Glsi13g1751 221 Coils Coil 36 70 - -
Glsi13g1751 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 180 - -
Glsi13g1751 221 Gene3D - 31 165 IPR012677 -
Glsi13g1751 221 SUPERFAMILY RNA-binding domain, RBD 83 190 IPR035979 GO:0003676
Glsi13g1751 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Glsi13g1751 221 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1751 Glsi-ChrGlsi13 33675199 33680564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1751 90 166 Eukaryotic Initiation Factors Gene Family AT2G36660 34.615 5.35e-11 59.7