Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1750 ATGGCAACCGGACCCGCACTGACTCCTTTCATCTTAGAGTCTACGAATCCAAAAGTTCTGGACAAAAAAGATGTCTTCAATGGTTTCAATCTTGATTCTCTCTTTTCTTTGGCTGAACTGTCCTGTCAGCTTTCATCGGCAATTGTATCATTTGGTTTTGCTGTGAATAGCGTGACTGTGGGCTCAAAGAAGGATTTTTTGGTGGCAATGGGAAATAGGGTTATGCTCTGGAGCATTATGATGTTGGTTGTTGGTGGTGGTGGTGTTGGGGCGTGGCTTCAGAGACGGCAATGGAGGCAAGTTTGTAGGGAGGCAGCGAAGGGTGGTTTGGAGGTTAATTTGCTGGAGAAAGTTGAGAAATTGAAGGAGGATTTGAGAAGCTCGGCGACAGTTATCAGGATTTTGTCGAGGCAGCTGGAGAAGTTGGGGATAAAGTTTCGAATCACCTGGAAGGCTTTGAAGGAATCCATAACTGAGACTGCAGCTCTGGCAAAGAAGAATTCTGGGGCCACAAGGGCATTAGCAGGGCAGTCAGACATTTTAGAGGAAGAGCTTGATGAAATTCAGGAACAACAGCAAAAACAACTTGATCTGATTCTTGCAATTGGTAAGACTGGTAAGCTGTGGGAAAGCAAAAGGTGGGAAACTAGTGAAGAACAAAGTACATCAGAAACGTCCAACTCAGCTGAGGAAGAGATTTCCTCAGGTTTGCTGTCTATACAGGTATACATGGCTTCTCTTAACCCATATCGGTACTTCACCACCACAGCTACCTTGCTTATTATACTTCTGAATCTTCTCTTCCGTCCAGTTTTTTGCTTCAACCAGCCACAGCCTTCAATTTCTGCTCGGGTAGGCTTTAAAGCCATGGTTGGTTGTGTATCCATTCCTGTCTCTAGCTGCTTTATGTGTGTGTGTGCCCCTGGTTTGATACGGATTCGATTGGGTATGTGCAGGAGCTGCTATTTGAGGAGAAAAGCAGGCTTGGTTCCATCCCTCCCAGCTGCCACAACAAGTGCAACGAGTGCCATCCATGCATGGCAGTTCAAGTTCCCACCTTGCCTAGCCACGAGCGCCTCCGACCGGGTCTTACCCGAACAACTCCCATGGGTTTCTTCGATCCATCTTACCAGGGTAACAGGTACTCCAATTACAAGCCATTGGGGTGGAAATGCCATTGCGGTGACCACTTTTTCAACCCCTAGAAATTGGGATTTCTCATACCCTCCTTCCACAAAGACGATGACCTCGTCGTTCAGAACAAAAGTGAATCCTTGGGATCTAACAAGCCATTCGTTGAAAGAATTTAGAAAGGAAAAAAGAGATGCCAATGCCACAGCCACACGAATTAGGGAGGCCCATCGATCTTCTTCTCAGCTCTCCACTTTCATGGCGTCTTCTCTGACCCCTTCTCCTCCAAATCTTTCAACTACCTCCTCCTATCCCCGTCCCCTTAACTCACTCTCCCACACCACCACTATCCTTACCAAACATCGGCTTCTGAATCCCCGAATTAAGTTATTCGCCTCCAAACCCCGTGTCTTCTCAGTCTCGGCTTCAGCTTCGCCTTCACCTCTTCAAGCTCTCATATTTGACTGCGATGGTGTCATTCTCGAGTCCGAGCACTTGCATCGCCAGGCATACAACGATGCATTTGCTCACTTCAATGTTCGTTGCCCCTCTTCTTCTCTGCAACCTCTCAATTGGGGCATCGAATTTTACGATGAGCTCCAGAATCGCATTGGTGGAGGCAAACCCAAAATGCGATGGTACTTCAAAGAGAACGGCTGGCCCTCTTCCACGGTATTTGAGACACCTCCGAGTAATGATGAGGACCGAGCCAAGTTAATTGACACTCTTCAGGACTGGAAAACTGACAGATACAAAGAAATAATCAAGTCTGGAACTGTAAAACCCAGACCTGGAGTTTTGAGATTGATGGATGAGGCCAAGGATGCTGGGAAAAAGCTTGCAGTTTGCTCAGCAGCGACAAAAAGTTCAGTTATTCTCTGTCTTGAGAACCTTATAGGAATTGAGCGCTTTCAGAGCCTTGATTGCTTCCTTGCTGGTGATGATGTAAAGGAAAAGAAGCCTGACCCATCAATATATTTGACAGCTTCCAAGAAGCTTGGTGTGTCAGAGAAAGACTGCTTGGTGGTAGAGGATAGTGTTATTGGCTTACAGGCAGCAACAAAAGCAGGGATGTCTTGCGTGGTTACCTACACATCTTCAACAGCTAAACAGGATTTTGGAGATGCAATTGCAGTCTACCCTGACTTGAGTAACATAAGATTGAAAGATTTGGAAATGCTCCTACAAAATTTAGTTGCTACCTAA 2337 0.4621 MATGPALTPFILESTNPKVLDKKDVFNGFNLDSLFSLAELSCQLSSAIVSFGFAVNSVTVGSKKDFLVAMGNRVMLWSIMMLVVGGGGVGAWLQRRQWRQVCREAAKGGLEVNLLEKVEKLKEDLRSSATVIRILSRQLEKLGIKFRITWKALKESITETAALAKKNSGATRALAGQSDILEEELDEIQEQQQKQLDLILAIGKTGKLWESKRWETSEEQSTSETSNSAEEEISSGLLSIQVYMASLNPYRYFTTTATLLIILLNLLFRPVFCFNQPQPSISARVGFKAMVGCVSIPVSSCFMCVCAPGLIRIRLGMCRSCYLRRKAGLVPSLPAATTSATSAIHAWQFKFPPCLATSASDRVLPEQLPWVSSIHLTRVTGTPITSHWGGNAIAVTTFSTPRNWDFSYPPSTKTMTSSFRTKVNPWDLTSHSLKEFRKEKRDANATATRIREAHRSSSQLSTFMASSLTPSPPNLSTTSSYPRPLNSLSHTTTILTKHRLLNPRIKLFASKPRVFSVSASASPSPLQALIFDCDGVILESEHLHRQAYNDAFAHFNVRCPSSSLQPLNWGIEFYDELQNRIGGGKPKMRWYFKENGWPSSTVFETPPSNDEDRAKLIDTLQDWKTDRYKEIIKSGTVKPRPGVLRLMDEAKDAGKKLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKKLGVSEKDCLVVEDSVIGLQAATKAGMSCVVTYTSSTAKQDFGDAIAVYPDLSNIRLKDLEMLLQNLVAT 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1750 778 FunFam HAD family hydrolase 634 756 - -
Glsi13g1750 778 NCBIfam HAD-IA family hydrolase 623 739 IPR006439 -
Glsi13g1750 778 Pfam Haloacid dehalogenase-like hydrolase 529 739 IPR041492 -
Glsi13g1750 778 MobiDBLite consensus disorder prediction 450 483 - -
Glsi13g1750 778 Gene3D Putative phosphatase; domain 2 540 637 IPR023198 -
Glsi13g1750 778 CDD HAD_CbbY-like 528 742 - -
Glsi13g1750 778 Coils Coil 777 778 - -
Glsi13g1750 778 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 487 772 IPR044999 GO:0016787
Glsi13g1750 778 Coils Coil 433 453 - -
Glsi13g1750 778 Coils Coil 171 198 - -
Glsi13g1750 778 Gene3D - 528 757 IPR023214 -
Glsi13g1750 778 SFLD phosphoglycolate phosphatase 526 764 - -
Glsi13g1750 778 MobiDBLite consensus disorder prediction 440 483 - -
Glsi13g1750 778 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 526 764 - -
Glsi13g1750 778 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 526 537 IPR006439 -
Glsi13g1750 778 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 702 722 IPR006439 -
Glsi13g1750 778 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 684 700 IPR006439 -
Glsi13g1750 778 SUPERFAMILY HAD-like 519 762 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1750 Glsi-ChrGlsi13 33655390 33673625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1750 27 210 Eukaryotic Initiation Factors Gene Family AT5G65250 50.785 3.49e-46 165