Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1749 ATGGCCATTACACCTTTTGGAAGTACATCTGTTGCACAATGGGGAATTCATCCTCAGTTTTTTGTGAGATCCTGTATGACAGGAAAGATTACATCATCTGGATACAGTGTTACAAGAAGGGTAAGCTTTTTCGCTGCCCCAAGTTCGAGCTTTTTGTCTCGGGATTCCTTGCATGCACTATTTGACATGGGTTCATCTCAAGCTTTGCACCGACACAGGGGATCAAGGTTGATAGTTAGAGCAGATACTGATTTCTATTCCGTCCTTGGGGTGTCAAGAAATGCTACTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAATCATCATCCAGATGTGAACAAAGAAGCTGGAGCTGAACAGAAGTTTAAGGAAATTAGCAATGCATATGAGGTCTTGTCGGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAGTGGGCATGGGGGATTTCAGTAATCCTTTTGATCTGTTTGAGACGTTGTTTGAGGGCATGAATCGCGGCATGAACCCTAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTATAGTCTTGTCTTGAGCTTTAAGGAAGCAGTTTTTGGGGTAGAAAAAGAGATAGAAGTAAACCGATTAGAGAGCTGTGGAACTTGCAATGGTTCTGGGGCTAAACCAGGAACTAAGTCATCCAGATGTAGCACTTGTGGGGGTCAAGGTAGGGTTGTCTCATCAACAAGGACACCGTTAGGTATTTTCCAGCAGTCAATGACATGCTCTTCATGCAACGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGACTGAGGAGAACGAAGCGGATAAGTTTGAAAGTCCCAGCTGGTGTGGACTCCGGTAGCCGTCTAAGGGTTCGAAATGAAGGAAATGCCGGAAGAAAAGGTGGTTCTCCTGGTGACCTCTTTGTTGTTATCGAAGTTATCCCTGATCCTGTCCTTAAACGTGATGAAACCAACATTTTATACTCTTGTAAGGTTTCTTACATAGATGCAATCTTGGGGACTACAATTAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCTGCTGGGACCCAACCGAATACGACACTTGTTATGGCGAGGAAAGGTGTTCCCCTGCTGAATAAAAGCAATATGAGAGGGGATCAGTTGGTTCGTGTGCAAATTGAAATCCCTAAAAGACTGAGCAGCGATGAGAGAAAGCTTATAGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCGACCAGTAGGAGATAA 1320 0.4394 MAITPFGSTSVAQWGIHPQFFVRSCMTGKITSSGYSVTRRVSFFAAPSSSFLSRDSLHALFDMGSSQALHRHRGSRLIVRADTDFYSVLGVSRNATKSEIKSAYRKLARNHHPDVNKEAGAEQKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGVGMGDFSNPFDLFETLFEGMNRGMNPRGSWNGAIDGEDEYYSLVLSFKEAVFGVEKEIEVNRLESCGTCNGSGAKPGTKSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRLRRTKRISLKVPAGVDSGSRLRVRNEGNAGRKGGSPGDLFVVIEVIPDPVLKRDETNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMARKGVPLLNKSNMRGDQLVRVQIEIPKRLSSDERKLIEELADLSKGKTATSRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1749 439 Gene3D - 222 285 - -
Glsi13g1749 439 FunFam Putative Mitochondrial DnaJ chaperone 278 327 - -
Glsi13g1749 439 Gene3D - 332 439 - -
Glsi13g1749 439 CDD DnaJ 84 137 IPR001623 -
Glsi13g1749 439 Hamap Chaperone protein DnaJ [dnaJ]. 81 435 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi13g1749 439 Gene3D - 192 327 - -
Glsi13g1749 439 CDD DnaJ_zf 222 285 IPR001305 GO:0031072|GO:0051082
Glsi13g1749 439 ProSiteProfiles Zinc finger CR-type profile. 209 290 IPR001305 GO:0031072|GO:0051082
Glsi13g1749 439 PRINTS DnaJ domain signature 120 140 IPR001623 -
Glsi13g1749 439 PRINTS DnaJ domain signature 104 119 IPR001623 -
Glsi13g1749 439 PRINTS DnaJ domain signature 140 159 IPR001623 -
Glsi13g1749 439 PRINTS DnaJ domain signature 86 104 IPR001623 -
Glsi13g1749 439 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Glsi13g1749 439 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Glsi13g1749 439 CDD DnaJ_C 193 415 - -
Glsi13g1749 439 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 288 IPR036410 -
Glsi13g1749 439 Pfam DnaJ domain 84 145 IPR001623 -
Glsi13g1749 439 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Glsi13g1749 439 Pfam DnaJ C terminal domain 197 412 IPR002939 -
Glsi13g1749 439 FunFam Chaperone protein dnaJ 1, mitochondrial 332 439 - -
Glsi13g1749 439 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 48 436 - -
Glsi13g1749 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 345 IPR008971 GO:0006457|GO:0051082
Glsi13g1749 439 SUPERFAMILY Chaperone J-domain 80 176 IPR036869 -
Glsi13g1749 439 Gene3D DnaJ domain 81 184 IPR036869 -
Glsi13g1749 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Glsi13g1749 439 Pfam DnaJ central domain 222 285 IPR001305 GO:0031072|GO:0051082
Glsi13g1749 439 FunFam Molecular chaperone DnaJ 214 290 - -
Glsi13g1749 439 SMART dnaj_3 83 140 IPR001623 -
Glsi13g1749 439 NCBIfam molecular chaperone DnaJ 84 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1749 Glsi-ChrGlsi13 33649496 33652896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1749 86 147 C2H2 Transcription Factor Family AT1G74250 44.118 2.25e-09 57.8