Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1747 ATGAACAGGGAGAGACAAATGAATTCAAATATATGTTTGATCACTATATTACTCAAATCTAATAATTTTCTTCTAATCTCTCTGTGGTTGATACCAGTGGAAATGGACTTCATAATTATCCTTTTGCTATTGGCTTGCTTATGCTCTTTTGTATCGCCTGATTTACAAGGAGATGCACTATTTCAATTGAAGTTATCATTGAATGCTTCATCCAATCAGCTTACTGACTGGAATCAAGATCAAGTAAACCCCTGTACTTGGTCCCGTGTTTATTGTGACCAGAATTACAATGTTGTTCAAGTTTCACTAGCATTGATGGGATTTACTGGATCATTGACGTCCAGAATAGGAGCTCTAAAATCTCTTACAACTCTTTCATTGCAAGGGAATGGCATCACTGGTGACATACCAAAGGAATTAGGAAATCTGACAAGCTTAATCAGGTTGGATTTGGAAAACAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACTTTGAGTCAAAACAATCTAAGTGGGACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTCTGCTGGACTCAAATGATCTCAGTGGTCAGATTCCTGAGCAGTTATTTAAAGTTCCTAAATACAATTTCACTGGAAATAAGTTGAATTGTGGCATGAATTATCGTTCCCCTTGTGCTTCTAATAGTGCAGATCAAGGCTCATCTAATAAGCCAAAAATTGGCCTTATAGTTGGAATTATTGTAGGGCTAGTTGTTATCCTTTTTCTTGGTGGTCTGCTATTCTTCTGGTGCAAGAGTAGACGCAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGCCGAATCGCGTTTGGTCAACTAAAAAGATTTGCATGGAGAGAGCTACAGATAGCTACGGACAATTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTCTCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGTGGAGATGCAGCTTTCCAGCGGGAAGTTGAGATGATAAGTGTAGCTGTCCATAGAAACCTGTTACGGCTGATTGGGTTTTGTACTACTCCAACCGAGCGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTGAAACCTGGGGAATCTGTTTTAGACTGGCCAACAAGAAAAAGAGTGGCATTGGGCACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGTGACTTCGGTTTGGCAAAGTTAGTTGATGTTCGAAAAACCAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATTGCTCCTGAATACTTGTCCACGGGGAAATCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGGGCAATTGACTTTTCACGTCTAGAAGAGGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTAGAGCGGGAAAAACGTCTTGATGCTATTGTAGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTTGAAATGATGATAAAAGTTGCATTGCTCTGCACACAAGCTTCACCAGAGGACCGTCCAGCGATGTCAGAGGTTGTTAGAATGCTAGAAGGAGAAGGGCTGGCCGAAAGGTGGGAGGAATGGCAACATGTGGAGGTCAATCGAAGGCAAGAATATGAGAGACTACAAAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAACCAAGATGCCATCGAGTTGTCTGGTGGGAGATGA 1923 0.4067 MNRERQMNSNICLITILLKSNNFLLISLWLIPVEMDFIIILLLLACLCSFVSPDLQGDALFQLKLSLNASSNQLTDWNQDQVNPCTWSRVYCDQNYNVVQVSLALMGFTGSLTSRIGALKSLTTLSLQGNGITGDIPKELGNLTSLIRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLASLPSLINVLLDSNDLSGQIPEQLFKVPKYNFTGNKLNCGMNYRSPCASNSADQGSSNKPKIGLIVGIIVGLVVILFLGGLLFFWCKSRRKGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLSDNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGESVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIKVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1747 640 Pfam Leucine rich repeat N-terminal domain 55 93 IPR013210 -
Glsi13g1747 640 Gene3D Phosphorylase Kinase; domain 1 286 393 - -
Glsi13g1747 640 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Glsi13g1747 640 SMART serkin_6 317 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1747 640 FunFam Somatic embryogenesis receptor-like kinase 1 394 611 - -
Glsi13g1747 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 40 602 - -
Glsi13g1747 640 CDD TM_EGFR-like 248 282 - -
Glsi13g1747 640 Gene3D Transferase(Phosphotransferase) domain 1 394 611 - -
Glsi13g1747 640 SUPERFAMILY Protein kinase-like (PK-like) 297 592 IPR011009 -
Glsi13g1747 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Glsi13g1747 640 Pfam Protein kinase domain 318 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1747 640 SUPERFAMILY L domain-like 58 223 - -
Glsi13g1747 640 ProSiteProfiles Protein kinase domain profile. 317 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1747 640 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Glsi13g1747 640 FunFam Putative LRR receptor-like serine/threonine-protein kinase 53 237 - -
Glsi13g1747 640 FunFam Somatic embryogenesis receptor kinase 1 286 393 - -
Glsi13g1747 640 Gene3D Ribonuclease Inhibitor 54 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1747 Glsi-ChrGlsi13 33633631 33643142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1747 34 640 Receptor kinase-like Gene Family AT5G10290 79.077 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi13g1747 Pkinase 1.5e-43 CL0016