Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1745 ATGGGAAGGTCTCCGTGCTGTGATGAGATTGGTTTGAAGAAAGGTCCTTGGACCCCAGAAGAAGATCAGAAGCTTGTTAGCTACATTGAAAAACATGGTCATGGGAGCTGGAGGGCTCTTCCAAAACTAGCAGGGCTCAACAGATGTGGCAAAAGTTGCAGGTTAAGATGGACGAACTACTTGAGACCTGACATAAAGAGAGGGAAATTTTCCCAAGAAGAACAACAAACAATTCTGAATCTCCATGCTATCCTGGGAAACAAATGGTCAGCAATTGCGAGCCACTTACCAGGACGGACAGATAACGAAATCAAGAATTTCTGGAACACCCATCTCAAGAAGAAGCTGATTCAAATGGGTTATGATCCGCTCACACACCAGCCTCGAACTGATATCTTCTCAAGCTTGCCTCATCTCATAGCTCTGGCTAATCTGAAAGAACTTTTGGACCATCAACCATGGGAACAAAATACTGCCAGACTACAAGCAGAGGCCGTTCAACTGGCCAGTCTTCAATGCCTACAACATCTCCTGCAGCCTCAAGCATCTACCGACGACAACTTAAACTGCATAAACAGTACCTTCGCGGACATGGATACCAATACCAGTAATCTTTTGAACTCCCTCTGTCTGACGAAGAACAACTCAGTGTTAAGCTCACCCAATTCTCCATGGCTTCTTTCATGCTCGAGCACTCCATCTCCTTCCCCTGTGGCTCCACCTGCAATGACGGAGACTTCAATGACAATTATGGGTGATCATTCTAGTGTTTACGGAGAAGTGGGCCCTTCTATGTGGCCTGAGCTACTGCTGGAGGACCCTTTGTTCCATGAGATTGCGTAG 843 0.4638 MGRSPCCDEIGLKKGPWTPEEDQKLVSYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEQQTILNLHAILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPLTHQPRTDIFSSLPHLIALANLKELLDHQPWEQNTARLQAEAVQLASLQCLQHLLQPQASTDDNLNCINSTFADMDTNTSNLLNSLCLTKNNSVLSSPNSPWLLSCSSTPSPSPVAPPAMTETSMTIMGDHSSVYGEVGPSMWPELLLEDPLFHEIA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1745 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi13g1745 280 CDD SANT 69 112 IPR001005 -
Glsi13g1745 280 Gene3D - 69 116 - -
Glsi13g1745 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi13g1745 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi13g1745 280 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi13g1745 280 CDD SANT 16 61 IPR001005 -
Glsi13g1745 280 SMART sant 13 63 IPR001005 -
Glsi13g1745 280 SMART sant 66 114 IPR001005 -
Glsi13g1745 280 FunFam Transcription factor MYB39 69 130 - -
Glsi13g1745 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi13g1745 280 Gene3D - 11 67 - -
Glsi13g1745 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi13g1745 280 FunFam MYB-related transcription factor 13 66 - -
Glsi13g1745 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Glsi13g1745 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1745 Glsi-ChrGlsi13 33621409 33622478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1745 1 210 MYB Transcription Factor Family AT1G34670 72.300 2.86e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1745 Myb_DNA-binding 3.3e-17 CL0123