Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1743 ATGGCTGAAAGCAGGCGCTACGGTCTTGAAAAGCAATTGGGCTTTGAGCATATATTCTTTGAAGCACAACATCGATGGCTACGTCCAGCTGAAATTTGTGAAATTCTTCGTAATTATAAGAAGTTTCATATTGCTCAAGAACCTGAAAATAGGCCACCAAGTGGTTCACTTTTCATATTTGATCGGAAAGTGCTGAGATACTTTAGAAAAGATGGCCATGACTGGAGGAAGAAAAAAGATGGAAAAACAGTGAAGGAAGCTCATGAAAGACTTAAGGCCGGAAGTGTGGATGTATTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGCAGTTACTGGATGCTTGAAGAGGAGCTCTCACACATTGTTCTTGTCCACTATCGGGAAGTGCAGGGAACTAGGGCAAATTTTAAATGTGCTAAAGACAATGAAGAAGCTCTTCATTATGCCCAAAAAACTGGCGATACTATGCTCGGCACTGAGATGGACACTTCATCATTGTCTAGTCTTCATCCCAATAGTTACCAGGTTCCTTCACAAACTATGGATACAGCAAGCATGATCAGTGCTCAGGCATCAGAATATGAAGAAGCTGAATCTGCATTCAATAACCATGTAGGTTCCCAGTTCTACTCTTTCCTTGAGCTGCAACAGCCAGTGGTTGAGAAGATTAATGCTAAACTCCCTGATCCTTATCATTCTCACCCATGTTTAAATGATAAGGGGAAGTTGTCAGGCATTTCTGGGGTGGATTATGTCTCTCCTAGTCAAGCCAGTGAAATCAAAGACATAGATGATGCTGGCTTAACGTATGAACCCCAAAAACAACTTGGTTTTTCATCATGGGAAGATGTCTTCAAAAACAATGCTGGAAGTCAACCTGTGCCTTTTCATCACTCATTGCCTGTAACACAACCAGATACCATAGGAATCAATAGCATTTCCTCTCAAGGAGATGCAGTAATGCGGCAACTCTTTACCAGCAGCATAGCTAAACAGCATGAGAATTGGAGTCTCGTACAAGTTCAAGGAAATGTGCAGGCTTCTGGTTGTAATTCTTCACGCTTACCCAGTTGGCCCACAGATAGTGTGCATCCTGGCTCAGTCTGTGAGGTTAGTTCTAGGCACTGTGAGCAAGAAATTAATGAAGATGACTTTCAGAAGTCGTTGGACAAGAGTCTTGTACATCCAGACCAGAAAAACAAGTGTCTTGTGCAAAATGATCCTCAACAAGAGCTCTTAAATGCACAAGACAACTGTAAATTAGAATCAGATCTAGAGACTAGTAGGAGTCTGGATGGAATAGATGATGACACTTATTTCACTTTAAAGCAGATTCTCTTAGATGGATCTGCTACAGAAGAGGGCCTGAAAAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTAGATGAACTGAATATACAATCTACTTCAGGCACGTATTGGGATACTGTTGAAAACGAAAATGGGGTTGACAGTACAGCCTTTTCTCCCCAAATTCACTTGGACACCTATCTCCTGGACTCATCTGTTTCCCATTGTCAGCTTTATAGCATTATTGACTTTTCTCCGAGCTGGACATACGAGAACTCAAAAATTAAGGTCCTTATTTCAGGAAAATTCTTAAGGAGTCGACAAGAAGCAGAAAATTGTAAGTGGTCATGCGTGTTTGGGGAGGTAGAAGTTCCTGCAGAGATTATCAGCAACGGTGTTCTTCGTTGTCATACCCCTCTTCACAGGGCTGGGAGGGTTCCTTTCTATGTAACATGTTCCAATTGGTTAGCATGTAGTGAAGTGCACGAATTTGATTTCCGAGTAAACCATATTCAAGAAGTCAACACTGAAGATAAGAATAGAGGCAGCATTTTTGAAATATTTAGTATGCGATTTGGAGCACTATTGTCCCTAGATTGTGCCTTCCCTCGACATTTAGAATCCATTAGTTCAAGTGAGAAATTTCAGCTGGGAAGCAAAATCAGTTCTTTGCTGAAAGAGGAAAATGATAAATGGGAGATATTGCTTAAACTTACCCAAGAGAAAGATTTTTCTCCAGAAGTTGTACGTGAGCAACTGGTTGAAGAGCTTCTGAAAGAAAAGTTGCTGGCATGGCTCCTTGAGAAAATTACTGAAGATGGGAAAGGGCCTAATGTATTAGATGAGGGTGGTCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTACGATTGGGCCCTTCAACCTACAGTAGTTGCAGGTGTGAATGTTAACTTTCGTGATATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTATGGCAGTGAGCGCACAGTTGCTTCCCTCATTTCTCTTGGTGCAGCGCCTGGAGCACTGACTGATCCATGCCCAAAATATCCTTCTGGCAGAACGCCTGCTGACCTAGCTTCCGCAAATGGACACAAAGGGATTGCAGGGTATCTTGCAGAATCTGCCTTGAGTGCGCACCTCGTATCTCTTAATTTGAACAAGGAAGGTGCTGCTAAAGAAAATTGTGGAGCAAAAGAAGTACAAAGAGTTCAGGAACAAAATAAAACTACCGTTAATGATGGAGACATATCATATGGACTTTCAATGAAAGATTCACTCGCTGCAGTTTGTAATGCCACCCAAGCTGCTGCTCGTATTCATGAAGTTTTCAGAGTGCAGTCATTCCAGAGAAAACAATTGAAAGAACATGGTGATGGAAATTTTGGAATATCCGATGAAGATGCTCTTTCATTTATAACAGTCAAGTCACACAAGGCTGGACAACGGGATGAGCCTATCCATGCTGCTGCAATACAAATCCAGAAGAAGTTCCGTAGTTGGAAGGGCAGAAAAGAATTTTTGATAATTCGGCAGCGAATAGTGAAAATTCAGGCTCATGTAAGAGGCCACCAGGTTAGGAAAAATCACAGAAAGATAATATGGTCTGTTGGAATTGTGGAAAAGGTTATTTTACGTTGGCGTCGAAAAGGCAGTGGTTTACGTGGATTTAAATCAGAAGCCATTAATGAGGGCGCTATGGTACAAGATATGTCTTCCAATGAGGACTATGATTTCCTAAAAGAAGGCAGGAAACAAATAGAGGATAGGCTGCAGAAAGCCCTAGCCAGGGTCAAGTCAATGGCTCGGTATCCAGAGGCAAGAGATCAATACCATAGGTTGGTGAATGTTGTAACTGAGGTTCATCAAACACAGGTAAAATATGATAGGAGTTTAAACAATTCCGAAGAAACAATCGAAAGTGATGACGTCCTTGATCATGAAACATTGTTGGACGAAGATACTTGTATGCCTACAGCCACCTAG 3339 0.4166 MAESRRYGLEKQLGFEHIFFEAQHRWLRPAEICEILRNYKKFHIAQEPENRPPSGSLFIFDRKVLRYFRKDGHDWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVQGTRANFKCAKDNEEALHYAQKTGDTMLGTEMDTSSLSSLHPNSYQVPSQTMDTASMISAQASEYEEAESAFNNHVGSQFYSFLELQQPVVEKINAKLPDPYHSHPCLNDKGKLSGISGVDYVSPSQASEIKDIDDAGLTYEPQKQLGFSSWEDVFKNNAGSQPVPFHHSLPVTQPDTIGINSISSQGDAVMRQLFTSSIAKQHENWSLVQVQGNVQASGCNSSRLPSWPTDSVHPGSVCEVSSRHCEQEINEDDFQKSLDKSLVHPDQKNKCLVQNDPQQELLNAQDNCKLESDLETSRSLDGIDDDTYFTLKQILLDGSATEEGLKKLDSFNQWMSKELGDVDELNIQSTSGTYWDTVENENGVDSTAFSPQIHLDTYLLDSSVSHCQLYSIIDFSPSWTYENSKIKVLISGKFLRSRQEAENCKWSCVFGEVEVPAEIISNGVLRCHTPLHRAGRVPFYVTCSNWLACSEVHEFDFRVNHIQEVNTEDKNRGSIFEIFSMRFGALLSLDCAFPRHLESISSSEKFQLGSKISSLLKEENDKWEILLKLTQEKDFSPEVVREQLVEELLKEKLLAWLLEKITEDGKGPNVLDEGGQGVLHFAAALGYDWALQPTVVAGVNVNFRDINGWTALHWAAFYGSERTVASLISLGAAPGALTDPCPKYPSGRTPADLASANGHKGIAGYLAESALSAHLVSLNLNKEGAAKENCGAKEVQRVQEQNKTTVNDGDISYGLSMKDSLAAVCNATQAAARIHEVFRVQSFQRKQLKEHGDGNFGISDEDALSFITVKSHKAGQRDEPIHAAAIQIQKKFRSWKGRKEFLIIRQRIVKIQAHVRGHQVRKNHRKIIWSVGIVEKVILRWRRKGSGLRGFKSEAINEGAMVQDMSSNEDYDFLKEGRKQIEDRLQKALARVKSMARYPEARDQYHRLVNVVTEVHQTQVKYDRSLNNSEETIESDDVLDHETLLDEDTCMPTAT 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1743 1112 SMART iq_5 937 959 IPR000048 GO:0005515
Glsi13g1743 1112 SMART iq_5 960 982 IPR000048 GO:0005515
Glsi13g1743 1112 ProSiteProfiles Ankyrin repeat region circular profile. 764 789 - -
Glsi13g1743 1112 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Glsi13g1743 1112 Pfam IQ calmodulin-binding motif 963 982 IPR000048 GO:0005515
Glsi13g1743 1112 Gene3D Immunoglobulins 522 618 IPR013783 -
Glsi13g1743 1112 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Glsi13g1743 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 929 988 IPR027417 -
Glsi13g1743 1112 SMART CG_1_2 18 136 IPR005559 GO:0003677
Glsi13g1743 1112 ProSiteProfiles Ankyrin repeat profile. 764 796 IPR002110 GO:0005515
Glsi13g1743 1112 FunFam Calmodulin-binding transcription activator 2 522 618 - -
Glsi13g1743 1112 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 1075 - -
Glsi13g1743 1112 Coils Coil 1028 1048 - -
Glsi13g1743 1112 FunFam Calmodulin-binding transcription activator 2 937 985 - -
Glsi13g1743 1112 SMART ANK_2a 803 832 IPR002110 GO:0005515
Glsi13g1743 1112 SMART ANK_2a 764 793 IPR002110 GO:0005515
Glsi13g1743 1112 ProSiteProfiles IQ motif profile. 938 967 IPR000048 GO:0005515
Glsi13g1743 1112 Pfam Ankyrin repeats (3 copies) 736 827 IPR002110 GO:0005515
Glsi13g1743 1112 SUPERFAMILY E set domains 529 614 IPR014756 -
Glsi13g1743 1112 Gene3D - 937 985 - -
Glsi13g1743 1112 ProSiteProfiles IQ motif profile. 961 985 IPR000048 GO:0005515
Glsi13g1743 1112 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Glsi13g1743 1112 Gene3D - 677 898 IPR036770 -
Glsi13g1743 1112 SUPERFAMILY Ankyrin repeat 717 826 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1743 Glsi-ChrGlsi13 33593746 33604519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1743 1 1088 CAMTA Transcription Factor Family AT5G64220 46.709 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi13g1743 Ank_2 1.6e-07 CL0465