Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1728 ATGACGCAACAGAATGTGAAATCCGGAATCAACATGGCTATTCCTGTTGGCGTATCCAACTCCTCCCTTCTCACCGCGGCGGCCTCTATTTTCATTCCAACAAGGAAAATCTTGAAGAACCTTGAAATCAATGGGGGAGCAAGAATTAATGCCTGGGTTGATTCCATGAGAACCTCTTCTCCAACTCATGTCAAATCCACTCCCTCTCTGGCCGAAGACCAGAGCTCTTGGATTCTTCGCCACCCGTCGGCATTAGACATGTTCGAACAAATCATCGATGCCTCAAAAGGAAAGCAAATCGTTGTGTTTCTGGACTACGATGGCACCCTATCGCCTATCGTGGACGACCCGGACCGTGCTTTCATGTCGGATGCGATGAGAAAAACAGTGAGAAAACTTGCAAGGTGTTTTCCAACTGCCATAGTGAGCGGGAGATGCAGAGACAAGGTGTACAACTTTGTTCGCTTGGCAGAGCTATATTATGCTGGAAGCCATGGCATGGATATCAAAGGCCCAACAAGATGCTCAAAATACAATAAAGACAGCAAAGCAGAGGCAGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAACAGTTAGTTGAGAAAACAAAATCAACTCCAGGAGCTAAGGTGGAAGACAACAAGTTCTGCGTCTCTGTTCATTATCGTTGCGTTGATGAGAAGAAATGGAACGAACTGGCACGCCAAGTGAGATCAGTGATAAAGGAGTACCCGAAGCTTCGTTTAACCCAAGGAAGGAAGGTCTTTGAGATCCGTCCCACAATTAAATGGGACAAAGGGAAAGCCCTCGAATTTTTGTTAGAGTCGCTCGGATTTGCCAACTGTGCTGATGTCTTTCCTGTTTACATTGGTGATGACCGAACCGATGAAGATGCATTCAAGAAATTAAGAGAGAGAGGACAAGGTTTTGGGATTCTTGTGTCAAAATTTCCAAAGGAAACCAGTGCATCTTACTCTTTACAGGAACCCGACGAGGTGAAGGACTTTCTTCGGCGTTTGGTGGAGTGGAAAAAAGTATCCCCGAGGGCGTGACAAACGGTAAATAAGAGGGCCCCTTATCAACTGTCTTACAAGGTTTCTTCTATCCTGGAATCTGTAGCTGACTCGAAAGGGGCAGTTGTGAGCAACACTTTTGATGCTCAAACAAACAATGCTGTACTATATGTGTCATTATTCAACGTTTCAATTATTTCTCCCCTCTGTGTCACTGCCCAGATACACTCCCTTGCCTTTCTATCATTTTCCCACGCCTGA 1296 0.4537 MTQQNVKSGINMAIPVGVSNSSLLTAAASIFIPTRKILKNLEINGGARINAWVDSMRTSSPTHVKSTPSLAEDQSSWILRHPSALDMFEQIIDASKGKQIVVFLDYDGTLSPIVDDPDRAFMSDAMRKTVRKLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRCSKYNKDSKAEAVLFQPASEFLPMIDEVYQQLVEKTKSTPGAKVEDNKFCVSVHYRCVDEKKWNELARQVRSVIKEYPKLRLTQGRKVFEIRPTIKWDKGKALEFLLESLGFANCADVFPVYIGDDRTDEDAFKKLRERGQGFGILVSKFPKETSASYSLQEPDEVKDFLRRLVEWKKVSPRAXQTVNKRAPYQLSYKVSSILESVADSKGAVVSNTFDAQTNNAVLYVSLFNVSIISPLCVTAQIHSLAFLSFSHA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1728 431 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 358 IPR044651 GO:0004805|GO:0005992
Glsi13g1728 431 Gene3D - 198 364 IPR023214 -
Glsi13g1728 431 Gene3D - 100 197 IPR023214 -
Glsi13g1728 431 NCBIfam HAD-IIB family hydrolase 102 312 IPR006379 -
Glsi13g1728 431 SUPERFAMILY HAD-like 101 350 IPR036412 -
Glsi13g1728 431 FunFam Trehalose 6-phosphate phosphatase 198 357 - -
Glsi13g1728 431 FunFam Trehalose 6-phosphate phosphatase 100 187 - -
Glsi13g1728 431 NCBIfam trehalose-phosphatase 98 348 IPR003337 GO:0003824|GO:0005992
Glsi13g1728 431 Pfam Trehalose-phosphatase 103 337 IPR003337 GO:0003824|GO:0005992
Glsi13g1728 431 CDD HAD_TPP 101 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1728 Glsi-ChrGlsi13 33489594 33492954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1728 96 347 Trehalose Biosynthesis Gene Families AT1G70290 26.022 4.55e-09 56.6