LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g1727	ATGGCTGCAGCTATAGGTATCTATAATAGCAGCAGGTTACCAGAATTTTTAGATCCGTGTAATGAAGAGCTGATGAAAGCACTTGAGCTTTTTATTAGAAGTGATTCGTCTCCCTCTTCTTTACCATCGTTCACCCTTTCTTCCCCATCTTCACCTGCATCTTTTTCCCTTTCTCCTTCCCCTTCTTCAAGCTCCCAAATGTTTTCCCCGGGTTTCTCGAGCTATGACCAAAAGCTTCTGGCGAAGACCAGTACCATAGGACTTAACCAACTCACCCCATCTCAAATTCTTCAGATTCAAGCTCAAATCCAGATCCGACAACAACAGCAACAGCTGCGTATCGGTGCCACGGCTGCAGCTTCCCTCCAACACCAAAATCAACCTGCCCTCAACTTCCTTAGCCCAAAACCAGTCCCCATGAAGCATGTCCGTAATCCTCCGAAACCCACAAAACTTTACCGTGGAGTGAGACAGCGGCATTGGGGTAAATGGGTGGCTGAGATCAGACTCCCCAAAAATCGTACCCGTCTCTGGCTTGGAACTTTTGATACTGCCGAGGAAGCGGCCTTGGCATATGATAACGCGGCGTATAAGCTAAGAGGAGAGTTTGCTCGGCTTAATTTTCCTCATCTCCGGCACCAAGGAGCTCATGTCTTTGGTGAATTTGGCGATTACAAGCCTCTCCATTCCTCAGTCGATGCGAAGCTCCAAGCTATTTGTCAAAGCCTGGCCAGTTCGCAGAAACAGGGGAATGCAGCGGAGCCTTGCTCTGAGGCCGATACAAAGCCTAAGATACAGTGTTGTTCGGAGGGAAAAGCAGCGTTTAATGGGGGTCCCGAAGTGGATGATTTTAAGGTGGAGACCTCAACATCGTCGCCCTTGTCGGATGAATCTTGGGCTGGTTCGTCTTCGCCCGAATCCGATATTTCTTTCCTGGATTTCTCGGATTCGAATTGGGATGAAAAGGAGAACTTTGGGTTGGAGAAGTTTCCTTCGGTGGAGATTGATTGGGCAGCTATTTGA	1023	0.4839	MAAAIGIYNSSRLPEFLDPCNEELMKALELFIRSDSSPSSLPSFTLSSPSSPASFSLSPSPSSSSQMFSPGFSSYDQKLLAKTSTIGLNQLTPSQILQIQAQIQIRQQQQQLRIGATAAASLQHQNQPALNFLSPKPVPMKHVRNPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGEFARLNFPHLRHQGAHVFGEFGDYKPLHSSVDAKLQAICQSLASSQKQGNAAEPCSEADTKPKIQCCSEGKAAFNGGPEVDDFKVETSTSSPLSDESWAGSSSPESDISFLDFSDSNWDEKENFGLEKFPSVEIDWAAI	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g1727	340	MobiDBLite	consensus disorder prediction	279	308	-	-
	Glsi13g1727	340	Gene3D	AP2/ERF domain	152	210	IPR036955	GO:0003700\|GO:0006355
	Glsi13g1727	340	PRINTS	Ethylene responsive element binding protein signature	175	191	IPR001471	GO:0003700\|GO:0006355
	Glsi13g1727	340	PRINTS	Ethylene responsive element binding protein signature	153	164	IPR001471	GO:0003700\|GO:0006355
	Glsi13g1727	340	FunFam	Ethylene-responsive transcription factor 2	151	210	-	-
	Glsi13g1727	340	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	9	340	-	-
	Glsi13g1727	340	MobiDBLite	consensus disorder prediction	285	308	-	-
	Glsi13g1727	340	CDD	AP2	151	211	IPR001471	GO:0003700\|GO:0006355
	Glsi13g1727	340	ProSiteProfiles	AP2/ERF domain profile.	152	209	IPR001471	GO:0003700\|GO:0006355
	Glsi13g1727	340	Pfam	AP2 domain	153	202	IPR001471	GO:0003700\|GO:0006355
	Glsi13g1727	340	SMART	rav1_2	152	215	IPR001471	GO:0003700\|GO:0006355
	Glsi13g1727	340	SUPERFAMILY	DNA-binding domain	152	210	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g1727	Glsi-ChrGlsi13	33468478	33469500	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g1727	3	340	AP2-EREBP Transcription Factor Family	AT4G39780	49.558	1.49e-86	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi13g1727		AP2	5.2e-15	CL0081