Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1709 ATGGTGAATTCTAACACTCTCGTGTATTCATCTGACTCATTCGTGCATTACTGGCATTTAGTCGTAAGCTGTGAAGCGAAGCTGGCGACCACACTAGCTTGGAGGCTTGCTGCCAACAATGGCAGCAGCCTTGCTTCTAATGATGTGGAAAGAAATGGTGAGGGGAAGACTCATGACTCAGAACCCCCAACTCCACATTCTGTTCAGAAAATGGGACTAAGAGAGCGAAGCAGCAGCATGGAAGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCCTCTGTGCAAGAGAAAGAGTATTCCTTAAGGCAATTATTGGAGCTTATAGATATGCGTGAAAATGCTTTCAGTGCCGTTGGATCTCACTCTCAGGCTGTTCCAGTACTTGTTTCTCTTCTCCGGTCAGGGCCATTGAGTGTGAAGATACAGGCAGCAACTGTATTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTCGGAGGATGTATTCCTCCATTGCTTGGTCTACTCAAGTCCAATTCAGTTGAAGGTCAAGTTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGTGTAAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAGAAGCTTCAAAAGGGCCTGATGACAGGAAATGTAGTTGATAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGGGATTCTGGAGTTCAACAATACAAGCTGGAGGAGCGGACATATTAATGGAGTTGCTGGCAACAGGACAGTCTAGCACTCTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATTGAGGATGCATCTATTTGTTCAAAAGTGTTGAAAGCAGAGGCGACAAAACAACTCCTGAAACTATTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAGTGCAAAGAAGCGAGGCGAGAGATAGCTAATTCTAATGGCATTCCTGCTTTGATCAATGCTACTATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTGCAGGAGAATGCTATGTGTGCTCTAGCAAACATTTCTGGTGGATTATCTTATGTCATCTCTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACTCAAATTGCTGACACATTAGGAGCTTTAGCTTCAGCTCTTATGATATATGACAACAAGGCTGAATCTACTAGAGCATCAGATCCTTTGGTTGTTGAACAGTCATTACTCAAGCAATTCAAACCTCGTTTTCCCTTTCTTGTGCAGGAACGAACCATTGAAGCCTTAGCTAGTTTGTATGGAAATCCCATACTCGCAGTTAAACTTGCAAATTCTGATGCCAAACGTTTGCTTGTTGGTTTAATAACAATGGCTTCCAATGAAGTGCAAGGTGAACTTATAAAAGCTCTCTTGACACTGTGCAATAATGAAGGCAGTCTATGGTCTGCACTTCAAGGGCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCTAAGGCAAAGGAAGATTCAGCCACAATCCTAAGGAACCTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTATTGTGGCTATTGAAGAATGGAAGTCCAAATGGGAAGGAGATTGCAGCAAAGACCTTAAATCACTTAATTCACAAATCTGATACAGCGACTATCAGTCAGCTTACAGCATTATTAACTAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTAGCTCCTCTTGGTGACATTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAGATATTGAGCTCTACCAAGGAAGAAACTCAAGCAAAGTCTGCATCAGCTCTGGCAGGACTTTTTGAAATGAGAAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCCATGAAGTTGCTCAACATTGAATCTCAGAGTATCCTAATGGAGTCTTCACGCTGCTTGTCTGCAATATTCCTTTCCATCAAAGAAAACAGGGATGTAGCTGCAGTTGCTAAAGATGCATTATCCCCCCTAGTTGCATTAGCTAACTCTTCAGTTTTGGAAGTAGCAGAGCAGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTTCAGAGAAAGCTGTTGCAGAAGACATTATCTTGTCTGCTACTAAAGTGTTACGTGAAGGCACAATTTCTGGAAAACCCCTAGCTGCAGCAGCCATTGCTCGCCTCTTACATTCTCGGAAAATTGATGATGCGGTAACTAATTGTGTCAATCGTGCTGGCACTGTTCTTGCTTTGGTTTCTTTCTTGGATTCTGCTACTAGTGGATCTGTTCCGACATCAGAGGCTTTAGAAGCACTTGCCATTCTGTCCAGGTCAGAAGAGACTGGTGCACATATTAAACCTGCATGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAGGCCCAATAGTCCTGTCTATTGCTGATTCAACACCAACCTTGCAGGATAAAGCTGTTGAGATCTTATCCCGATTATGCAGAGATCAACCTGTCATTTTAGGAGACACTGTTGCTGTTTCCTCTGGATGTATATACTCAATAGCTAAGAGAATAATCAGCTCCAAAAATGTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTAGTTGTGCTGCAAAAGTAAACCACCAGAGACTAGTGGAGGATCTCAATCAAACAAACTTGTGTGCTGATCTTGTTCAGTCACTTGTTGGTCTGCTTGTTTCCGAACAGCCTTCTTTGAGTACTCAGAGTGATGATGACAAGGAACTCATCAGTATTTGCAGGACTACAGAAGTGGAGAATGGTGGTGAATTCAATACAGGAACCAACATTATAAGTGGTTCCAACTTAGCCATATGGTTACTGTCTGTTCTTGCTTGTCATGATGAAAGAAGTAGAACTGGAATAATGGAGGCTGGTGCAATTGAGGTTCTCACTGACAGGATCTCAAATTGCTTCTCACAATATACCCAGATTGATTATAAAGAAGATAGCAGCATTTGGATTTGTGCTTTGCTGTTGGCAATCTTATTTCAAGACAGAGATATCATTCGAGCACATGCAACCATGAAATCTATTCCAGTACTTGCCAATTTAGTGAAGTCAGAGGAGTTGGCAAACAGATATTTTTCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTCGCAAATTCTGGGGCAGCTGGTGGGCTTATCTCCTTGCTTGGCTGTGCTGATATTGATATACAGGATCTTCTGGAACTGTCAGAAGAATTCTCTTTGGTGCGTTATCCTGATCAAGTTGTTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTTGTTGATCTGCTCAAGCCAATTCCAGATCGCCCAGGAGCACCAATTTTAGCACTTGGGCTTCTGACTCAGCTTGCTAGAGATTGCCCATCAAATAAGATTGTTATGGTGGAGTCTGGAGCCTTAGAGGCACTTACTAAGTATCTTTCACTCGGTCCACAAGATGCCACTGAAGAAGCTGCTACTGATCTTTTAGGAATTCTGTTTAGCAGTGCTGAAATACGGAGACATGAGTCAGCATTTGGTGCTGTTACACAACTTGTAGCTGTCTTACGTCTTGGAGGAAGAAGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTCTCTGCTGACCACATTAGGAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAATCCATCAAGAGCACTTGCCGTTGCTGATGTTGAAATGAATGCAGTGGATGTGCTTTGCAGGGTCCTTTCATCAAATTGTTCAATGGATCTAAAAGGGGATGCTGCTGAATTATGCTGTGTTCTTTTTGGAAATACAAGGATCCGTTCCACGGTGGCTGCTGCACGCTGTGTTGAGCCTCTAGTCTCTCTCCTTGTGACTGAGTTTAGTCCTGCTCAGCATTCAGTTGTCCGTGCATTGGATAGACTTGTTGATGATGAGCAACTAGCAGAGTTAGTTGCAGCACATGGTGCAGTTATTCCCCTTGTTGGGCTACTCTATGGTAGGAATTATGTGCTTCATGAGGCCACTTCCAGAGCTTTGGTCAAGTTAGGGAAAGATAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCTTACTTGACATTCTTCATGATGCACCTGATTATCTATGTGCGGCTTTTGCAGAGTTGCTGCGCATATTGACTAATAATACTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTCGAACCTCTATTTTATTTGCTGACAAAACAAGAATTTGGGCCTGATGGACAGCATAGTGCATTGCAGGTTTTGGTTAATATTTTAGAACATCCAGAGTGTCGTGCTGACTATACATTGACTTCTCGCCAGGCTATTGAACCACTTGTCCCCTTGCTTGATTCTCCAATATCAGCTGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTACTTTCAGAAGAACACCTTCAGAAAGATCCAGTGATACAGCAAGTAATTGGTCCTCTTATACGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTTGTTAGCATTGCACTGACATGGCCAAATGAAATTGCAAAAGAGGGCGGTGTTATAGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCATTATGGGAGTCTGCTGCCTCAGTTTTGTCAAGTATTCTGCAATTTAGTTCTGAATTTTACTTGGAAGTGCCTGTTGCTGTGTTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACAGTTATTGGTGCATTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGGACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTTCTAAGATCTCATCAGTGTGAGGAAACTGCTGCGAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGGGAAACAAAAGTTACCAAATCAGCCATCTTGCCATTATCCCAGTACCTCTTGGATCCACAAACCCAAGCGCAGCAAGCAAGATTACTGGCAACTTTGGCTTTGGGTGATCTGTTTCAGAGTGAGGGTCTTGCTCGGACAACTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTAATGTACAGTCGATCAAATAAAAGAGCAGTTGCCGAGGCTGGTGGTGTTCAGGTTGTTTTGGATCTGATTGGTTCAAGTGACCCAGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTCTCTAATCATACTATTCAAGAGTATGCTTCTAGTGAAACTGTCAGAGCAATAACTGCTGCTATTGAGAAGGATTTATGGGCTACTGGAACTGTGAATGATGAGTATCTGAAATCATTAAATGCTCTTTTTAGCAACTTCCCACGGCTAAGAGCAACTGAGCCAGCAACACTAAGCATTCCCCATCTGGTCACATCCTTAAAGACAGGCTCAGAGGCCACTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCTCAGTCAATAGCTGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCCCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTTGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCAGTTGGAAACCCGAGTGTTTACTGTAAGCTTACACTTGGCAACACTCCTCCAAGGCAAACCACGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGACGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGGCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGCAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTCGTAATGCTGGGAGCAGTAGCTGGAGAGTACACTCTATTGCCAGAAAGTAAAAGTGGTCCTTCAAGGAATTTAGAAATAGAATTTCAATGGTCTAATAAGTGA 6534 0.4339 MVNSNTLVYSSDSFVHYWHLVVSCEAKLATTLAWRLAANNGSSLASNDVERNGEGKTHDSEPPTPHSVQKMGLRERSSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGPLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSNSVEGQVAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEKLQKGLMTGNVVDSLLTGALKNLSSSTEGFWSSTIQAGGADILMELLATGQSSTLANVCFLLACMMIEDASICSKVLKAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVEQSLLKQFKPRFPFLVQERTIEALASLYGNPILAVKLANSDAKRLLVGLITMASNEVQGELIKALLTLCNNEGSLWSALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVAPLGDILREGSAASDAIDTMIKILSSTKEETQAKSASALAGLFEMRKDVRESSIAVKTLWSAMKLLNIESQSILMESSRCLSAIFLSIKENRDVAAVAKDALSPLVALANSSVLEVAEQATCAVANLILDSEISEKAVAEDIILSATKVLREGTISGKPLAAAAIARLLHSRKIDDAVTNCVNRAGTVLALVSFLDSATSGSVPTSEALEALAILSRSEETGAHIKPAWAVLAEFPKSIGPIVLSIADSTPTLQDKAVEILSRLCRDQPVILGDTVAVSSGCIYSIAKRIISSKNVKVKIGGAALLSCAAKVNHQRLVEDLNQTNLCADLVQSLVGLLVSEQPSLSTQSDDDKELISICRTTEVENGGEFNTGTNIISGSNLAIWLLSVLACHDERSRTGIMEAGAIEVLTDRISNCFSQYTQIDYKEDSSIWICALLLAILFQDRDIIRAHATMKSIPVLANLVKSEELANRYFSAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADIDIQDLLELSEEFSLVRYPDQVVLERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPILALGLLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRSARYSAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRVLSSNCSMDLKGDAAELCCVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEATSRALVKLGKDRPACKMEMVKAGVIESLLDILHDAPDYLCAAFAELLRILTNNTSIAKGPSAAKVVEPLFYLLTKQEFGPDGQHSALQVLVNILEHPECRADYTLTSRQAIEPLVPLLDSPISAVQQLAAELLSHLLSEEHLQKDPVIQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQSEGLARTTDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKSLNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTTVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFQWSNK 2177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1709 2177 Gene3D - 1704 2055 IPR011989 -
Glsi13g1709 2177 SMART arm_5 1337 1378 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1255 1296 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 295 336 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 594 634 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 844 886 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1507 1547 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1756 1795 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1595 1633 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1635 1674 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 338 387 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1210 1253 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 760 798 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 163 203 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1424 1464 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 552 592 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1465 1505 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 1883 1923 IPR000225 GO:0005515
Glsi13g1709 2177 SMART arm_5 121 162 IPR000225 GO:0005515
Glsi13g1709 2177 Gene3D - 643 851 IPR011989 -
Glsi13g1709 2177 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 56 2177 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Glsi13g1709 2177 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 563 605 IPR000225 GO:0005515
Glsi13g1709 2177 Gene3D C2 domain 2056 2177 IPR035892 -
Glsi13g1709 2177 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1208 1392 - -
Glsi13g1709 2177 SUPERFAMILY ARM repeat 1606 2054 IPR016024 -
Glsi13g1709 2177 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1406 1640 - -
Glsi13g1709 2177 Pfam C2 domain 2056 2147 IPR000008 -
Glsi13g1709 2177 SUPERFAMILY ARM repeat 686 1013 IPR016024 -
Glsi13g1709 2177 SUPERFAMILY ARM repeat 93 424 IPR016024 -
Glsi13g1709 2177 CDD C2 2058 2148 - -
Glsi13g1709 2177 Gene3D - 1555 1703 IPR011989 -
Glsi13g1709 2177 Gene3D - 1409 1546 IPR011989 -
Glsi13g1709 2177 SUPERFAMILY ARM repeat 454 759 IPR016024 -
Glsi13g1709 2177 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2055 2174 IPR035892 -
Glsi13g1709 2177 Coils Coil 324 351 - -
Glsi13g1709 2177 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1222 1266 IPR000225 GO:0005515
Glsi13g1709 2177 SMART C2_3c 2057 2153 IPR000008 -
Glsi13g1709 2177 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2056 2177 - -
Glsi13g1709 2177 SUPERFAMILY ARM repeat 1052 1185 IPR016024 -
Glsi13g1709 2177 Gene3D - 874 1195 IPR011989 -
Glsi13g1709 2177 ProSiteProfiles C2 domain profile. 2037 2154 IPR000008 -
Glsi13g1709 2177 Pfam Armadillo/beta-catenin-like repeat 552 591 IPR000225 GO:0005515
Glsi13g1709 2177 FunFam Coatomer beta subunit 1642 2055 - -
Glsi13g1709 2177 MobiDBLite consensus disorder prediction 43 84 - -
Glsi13g1709 2177 SUPERFAMILY ARM repeat 1213 1595 IPR016024 -
Glsi13g1709 2177 Gene3D - 453 642 IPR011989 -
Glsi13g1709 2177 Gene3D - 76 445 IPR011989 -
Glsi13g1709 2177 Gene3D - 1203 1408 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1709 Glsi-ChrGlsi13 33385240 33395335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1709 523 711 U-box Gene Family AT3G46510 31.500 1.42e-09 61.2