Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1703 ATGAGATCTCTCTCTGATTTCTTGCTTCATCTTTACTCAAAGGCCATAGTCCTATTGGTTTTACTGCTAATAGAACTCTTCCTCATCCTTCGAAAATTGAAGTCACATAAACCTCCAATTACCACCACCCAGTACCTCCAACTCATCGAAGAGAAGAACCCCACAATTTGTTGTACCAAAAGAACGAAGGCAGAGGACGTAGAGTGTAGGGTGTGCTTATCTGAGTTCGAGGAAGGAGACAAAGTGAGGAACTTGAAATGCAAACACACATTTCACAAGGATTGCTTGGATAAGTGGTTGCAACAATGTTGGGCTACTTGCCCACTCTGCAGAAGCAAAGTGTTGCCAGATGATGTCGTCACCGAGTATCGCCAGCTCCGAAATCAGAGGGAATTCTTCTTTCCCTTTTGGGATTCCTGGGAAGAATATTGA 432 0.4375 MRSLSDFLLHLYSKAIVLLVLLLIELFLILRKLKSHKPPITTTQYLQLIEEKNPTICCTKRTKAEDVECRVCLSEFEEGDKVRNLKCKHTFHKDCLDKWLQQCWATCPLCRSKVLPDDVVTEYRQLRNQREFFFPFWDSWEEY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1703 143 PANTHER - 1 130 - -
Glsi13g1703 143 Pfam Ring finger domain 68 111 IPR001841 -
Glsi13g1703 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 116 IPR013083 -
Glsi13g1703 143 SMART ring_2 69 110 IPR001841 -
Glsi13g1703 143 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Glsi13g1703 143 SUPERFAMILY RING/U-box 51 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1703 Glsi-ChrGlsi13 33342394 33342963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1703 68 125 C3H Transcription Factor Family AT1G15100 51.724 3.94e-17 71.6