Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1698 ATGAGTGTATATGATCCAATTCACCAGATTAGTATGTGGGAAGAAAACTTCAGAAGTAATTGCAATTTAAGTGCATCTGTATCCTTAATTGGTGAGGCAGATGTGAAGTTAGATAATCAGTCAGAGGATGCTTCTCATGGAATGCTGGGAATTCCTAAGAACTATGACCAAGAAGCTAATAAATCTATTGAAAAGATTCAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTGCGGAAAAAGGCCTATGTTCAGCAGTTAGAATCAAGTCGTGTGAAGCTGATCCAGTTAGAGCAAGAGCTTGAGCGGGCAAGGCAGCAGGGATCATATGTCGGTAGTGGATTGGATTCTGATAATCTGTTATTTGCTGGATCTGTAAATTCAGTTATTGCAACCTTTGAGATGGAGTATGGGCACTGGTTGGAAAAGCAAGATAGACAAATATGTGAACTGAGAACTGCTTTAAATGCTCATATCGGTGACACAGAGCTCAGGATACTAGTAGATGGTATAATGAACCACTATTCTGAACTCTTCCGCATGAAATCTGCTGCTGCAAAGGCGGATGTTTTCTATGTTATGTTTGGGATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATTGGAGGATTCCGCCCTTCTGAACTTCTAAAGGTTCTTGTCCCTATAATTGAACCCTTGACAGAGCAACAACGGTTGGATTTCTTTAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTACACAAGGAAAGGACAAACTCCAGCAAATACTGGCTGAAACTGTAGCAGCTGGACAACTGGTTGAAGGAGCTTATATTCCACAGATGGCTACTGCAGTGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTTTCGAATCCTTACAATTCGTCAGGCAGCTCGATGCCTGCTTGCTTTGGGGGAATATTTCCAACGCTTGCGGGCTTTGAGCTTACATTGGGCAAATCGTCCTCATGATCCTGCCTAG 1050 0.4343 MSVYDPIHQISMWEENFRSNCNLSASVSLIGEADVKLDNQSEDASHGMLGIPKNYDQEANKSIEKIQRRLAQNREAARKSRLRKKAYVQQLESSRVKLIQLEQELERARQQGSYVGSGLDSDNLLFAGSVNSVIATFEMEYGHWLEKQDRQICELRTALNAHIGDTELRILVDGIMNHYSELFRMKSAAAKADVFYVMFGMWKTTAERFFLWIGGFRPSELLKVLVPIIEPLTEQQRLDFFNLGQSCQQAEDALTQGKDKLQQILAETVAAGQLVEGAYIPQMATAVEKLEALVSFVNQADHLRQETLQQMFRILTIRQAARCLLALGEYFQRLRALSLHWANRPHDPA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1698 349 Coils Coil 84 111 - -
Glsi13g1698 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Glsi13g1698 349 FunFam BZIP family transcription factor 64 113 - -
Glsi13g1698 349 Coils Coil 247 267 - -
Glsi13g1698 349 SMART brlzneu 61 132 IPR004827 GO:0003700|GO:0006355
Glsi13g1698 349 CDD bZIP_HBP1b-like 65 117 - -
Glsi13g1698 349 SUPERFAMILY Leucine zipper domain 65 106 IPR046347 GO:0003700|GO:0006355
Glsi13g1698 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 63 107 IPR004827 GO:0003700|GO:0006355
Glsi13g1698 349 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Glsi13g1698 349 Pfam bZIP transcription factor 65 102 IPR004827 GO:0003700|GO:0006355
Glsi13g1698 349 Gene3D - 63 116 - -
Glsi13g1698 349 Pfam Seed dormancy control 151 226 IPR025422 GO:0006351|GO:0043565
Glsi13g1698 349 PANTHER TRANSCRIPTION FACTOR TGA9 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1698 Glsi-ChrGlsi13 33310535 33314027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1698 3 349 Calmodulin-binding Proteins AT5G10030 69.054 6.51e-176 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi13g1698 DOG1 9.4e-32 No_clan