Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1687 ATGACTGGGAAGAGAAACCAGACCAGCCCTGTGGGAAGCCCAACATCAGGGAACATCTCTGATAGCTCTTCGAAAGAGCAAGACCGATTCCTCCCCATCGCCAACGTTAGCCGTATCATGAAAAAGGCACTCCCAGCCAATGCCAAAATCTCAAAGAAAGCCAAGGAAACAGTCCAAGAATGTGTTTCTGAGTTCATAAGCTTCATCACTGGCGAAGCATCTGACAAGTGTCAAAGAGAGAAGAGGAAGACAATTAACGGGGATGATCTTCTGTGGGCTATGACAATACTGGGGTTTGAGAACTATGTTGGACCCTTAAAGAGCTACCTTAACAACTACAGGGAAACAGAGGGAGAAAAGAGTTGTATAGCTGGACAAGAAGATCACTCTGCGACAGAAGCAAATGATCAAGGGGTAACTGAAATCAACAAGTTGACTAATTCTGTATCAAACAAGGAAGACTTCCCCAATTGTAATGGCGGATTCTATTCTGTTATGTCTCAGGGGACTCCAAATAGCTTGACAGAGTTAGGAAGGGTCACCGGTTACCGAGGGAGTTCCATTAACATGGGTTTTGTTCATAACGCACTTCACAATGACGCAGATGCAAATGGGGACAGGTTGAAGGCAGCAAACCAACGTTACGGGGTTCAATGGTAG 660 0.4545 MTGKRNQTSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKKALPANAKISKKAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTILGFENYVGPLKSYLNNYRETEGEKSCIAGQEDHSATEANDQGVTEINKLTNSVSNKEDFPNCNGGFYSVMSQGTPNSLTELGRVTGYRGSSINMGFVHNALHNDADANGDRLKAANQRYGVQW 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1687 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi13g1687 219 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi13g1687 219 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Glsi13g1687 219 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Glsi13g1687 219 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Glsi13g1687 219 SUPERFAMILY Histone-fold 27 141 IPR009072 GO:0046982
Glsi13g1687 219 MobiDBLite consensus disorder prediction 1 27 - -
Glsi13g1687 219 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Glsi13g1687 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Glsi13g1687 219 Gene3D Histone, subunit A 17 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1687 Glsi-ChrGlsi13 33261060 33261719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1687 22 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.906 1.96e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi13g1687 CBFD_NFYB_HMF 2.6e-26 CL0012