Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1677 ATGGACTTGAGCGCGAAGCTTCATCACCTCGAGCTCAACTCCAGCTTCCCCACCGGCACACTCGTTTTGAATGCACGGAAAGCCGCTTTACGACCATATGTTCGGCTAGCTTCAAATCGCGTCGCTGCTCAAAACGTCAGAGGTAAAGCTAATTTAATATTTGGCCCCAAAAGATGGAGTCTTAATACTGCGGTTGCCGTTGAGACATCGGTGACCGAAACAACGACCAAAGAGGACATCGAGTCTTTATTTTCAGACACTAAGTTGGAAAATGTGAGTAAAAGTTACAAGGGTGTCACTGTGTTGGAAGATGTTAGCTGGGAAGTGAAAAAGGGGGAAAAAGTGGGATTGGTTGGTGTAAATGGTGCAGGGAAGACGACCCAGATGAGGATTATTGCTGGTCAGGAAGAGCCAGATTCGGGGAATGTAATAAAAGCAAAACCAAATATGAAGATTGCATTTTTGAGTCAAGAATTTGAGGTCTCCCTAAGTAGGACAGTGAGGGAAGAATTCATGAGTGCATTTAAAGAGGAAATGGAGATAGCAGCGAAGATGGAGAAGGTGCAGAAGGCACTCGAGGAGGCTGTAAACGATTTGGAGTTGATGGGAAGGCTTTTAGACGAGTTTGATTTGCTTCAGAGGAGGGCCCAGGCAGTAGACTTGGACGAAGTGGATGCAAAGATTAGTAAATTGATGCCGGAACTTGGGTTTACTCCAGAGGATTCAGACAGGTTGGTGGCGTCCTTTAGTAGCGGGTGGCAAATGAGGATGTCTCTTGGGAAGATTTTACTTCAGGAAACAGATTTATTACTGTTGGACGAACCCACAAATCACCTTGACCTTGACACCGTTGAGTGGCTTGAAGGCTATCTTGACAAGCAGGATGTGCCAATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGAGTACAAAAATTGTGGAAACTGACATGGGCGTATCCAGGACCTTTGAGGGAAATTATTCTCAGTATGTAGTTTCAAGGGAAGCATGGATTGAAGCACAATATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGGACAGACAAAAGACTTAATAAACAGGTTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGACCTAGTGGAGAAGCCATTTCAACATAAACAAATGAAAATCAGGTTCCCTGCGCGAGGCAGGAGTGGTAGAGCTGTCGCAACAATTAAGAACTTGGAATTTGGCTTTGAGGATAAGTTACTTTTTGACAAGGCCAATCTCACAATTGAAAGGGGAGAAAAAATTGCCGTTATTGGTCCAAATGGATGTGGCAAGAGTACTTTGCTGAAACTGATTATGGGTTTAGAGAAGCCAACTGGGGGTGAAGTTGTGCTTGGTGACCATAATGTTTTACCCAACTATTTTGAGCAAAATCAGGCTGAGGCTCTTGATCTAGACAAGACGGTGCTCGAGACTGTAGAAGAAGCTGCAGAGGACTGGAGAATCGATGATATTAAAGGACTTCTTGGGCGGTGTAATTTTAAATCTGATATGCTTCACCGTAAAGTTTCTCTATTAAGTGGTGGTGAGAAGGCACGCCTGGCTTTTTGCAAATTTATGGTAAAACCATCAACTCTGTTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAACTGACTACGAGGGCACCGTTATCACAGTGTCTCATGATCGATATTTTATAAGGCAGATAGTTAATAGAGTGATAGAAGTTAAAGATAACACTTTACAGGATTATGCAGGCGACTACAATTATTACTTGGAGAAGAATCTTGATGCTAGGGCAAGAGAGCTTGAACGTGAGGCAGAGCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCGAAGATGTCAAAGGCTGAGAAAGAAGTGCGGAAGAAACAAAAGATGCAGGCCTTTCAGGCAGCCAAACAAAAGTCGAAAGGTCAGAAAAATTCCAAGAGATGGAAATGA 2046 0.436 MDLSAKLHHLELNSSFPTGTLVLNARKAALRPYVRLASNRVAAQNVRGKANLIFGPKRWSLNTAVAVETSVTETTTKEDIESLFSDTKLENVSKSYKGVTVLEDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEEPDSGNVIKAKPNMKIAFLSQEFEVSLSRTVREEFMSAFKEEMEIAAKMEKVQKALEEAVNDLELMGRLLDEFDLLQRRAQAVDLDEVDAKISKLMPELGFTPEDSDRLVASFSSGWQMRMSLGKILLQETDLLLLDEPTNHLDLDTVEWLEGYLDKQDVPMVIISHDRAFLDQLSTKIVETDMGVSRTFEGNYSQYVVSREAWIEAQYAAWEKQQKEIGQTKDLINRLGAGANSGRASSAEKKLERLQEEDLVEKPFQHKQMKIRFPARGRSGRAVATIKNLEFGFEDKLLFDKANLTIERGEKIAVIGPNGCGKSTLLKLIMGLEKPTGGEVVLGDHNVLPNYFEQNQAEALDLDKTVLETVEEAAEDWRIDDIKGLLGRCNFKSDMLHRKVSLLSGGEKARLAFCKFMVKPSTLFVLDEPTNHLDIPSKEMLEEAITDYEGTVITVSHDRYFIRQIVNRVIEVKDNTLQDYAGDYNYYLEKNLDARARELEREAELEDKAPKVKAKSKMSKAEKEVRKKQKMQAFQAAKQKSKGQKNSKRWK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1677 681 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Glsi13g1677 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 414 629 IPR003439 GO:0005524
Glsi13g1677 681 Coils Coil 182 202 - -
Glsi13g1677 681 CDD ABCF_EF-3 88 317 - -
Glsi13g1677 681 Coils Coil 641 661 - -
Glsi13g1677 681 Gene3D - 84 368 IPR027417 -
Glsi13g1677 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 322 IPR027417 -
Glsi13g1677 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 87 345 IPR003439 GO:0005524
Glsi13g1677 681 CDD ABCF_EF-3 415 606 - -
Glsi13g1677 681 Gene3D - 376 644 IPR027417 -
Glsi13g1677 681 FunFam ABC transporter ATP-binding protein 374 642 - -
Glsi13g1677 681 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 88 675 - -
Glsi13g1677 681 FunFam Putative ABC transporter ATP-binding component 88 372 - -
Glsi13g1677 681 SMART AAA_5 111 326 IPR003593 GO:0016887
Glsi13g1677 681 SMART AAA_5 438 606 IPR003593 GO:0016887
Glsi13g1677 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 620 IPR027417 -
Glsi13g1677 681 MobiDBLite consensus disorder prediction 633 661 - -
Glsi13g1677 681 Pfam ABC transporter 102 277 IPR003439 GO:0005524
Glsi13g1677 681 Coils Coil 619 639 - -
Glsi13g1677 681 ProSitePatterns ABC transporters family signature. 249 263 IPR017871 GO:0005524|GO:0016887
Glsi13g1677 681 MobiDBLite consensus disorder prediction 633 681 - -
Glsi13g1677 681 Pfam ABC transporter 430 561 IPR003439 GO:0005524
Glsi13g1677 681 Pfam ABC transporter 316 403 IPR032781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1677 Glsi-ChrGlsi13 33172549 33176855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1677 416 631 Calmodulin-binding Proteins AT2G36910 26.446 1.79e-12 68.9