Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1658 ATGAATGATGCGAGGAATTCACTTATTGTAGCTCCTACACCAACTGCGTCTACTGGCCAGATTTTTAACTGTTTGGTAGATCAAGCAAAGACACTGGTTGATATGGCTGTGAATCGAGGATGCTACATAGATCAGAGTCAAAGCTTAAATATCCACATGGATCAACCCATATGCATGGTCGATGATCTTTCGCTGGAGAATATTTTGCTCATTGGGTCTGAACAGTGGGATGTATTATCCCGATCACGAGCTGCAGCTGAGGCTATCAAGTTCCCTGTTGATATCTCTACTCTCAAAAAACCTAGGGTGGAGGAGCAGGAGGATGATACTGAGATGGCACAGAGGGCACTTCTTCGGGAAAAAACATTGGCAACCGATGATGTTGGAACTATATCTCCTGGAGTTGAGGCATCAAACTGGAAAACTTCCATGCATATGCTAGAACTTAACATTGGTCTTGCATCAGAGAAACGGAATGTGAGAAATTTGGGTGTGGATAGGGAGAGGGAGATGTCTGCTATGGTCTCCGCACTGACCCATGTGGTGTCTGGAGATGTGCCCCGTGATTATACGCTTCAGCATCATTCCACCTATTCCAGTGCAGTTCAAGGTGCCGCTGCTGTTTCTGCTTCTGCAGCACCATCTTCGTCTTATGTTGGCACTTCTGCTTTAAAGAGAAGTAGGGAAGAGGTTGAACCCTTGGGTGACTTCTCACGGGGAGGTTCATCCCCTGCGATTCTAACAGTTGGAGAAAGCTCAAGCACATGGCGAGAAATGGGCCGAATGGCAAATGCTGTAGATTATTACTGTACAGACAATGGCCGTGAGCAGCCGAGAAGAAAATACAGAGGAGTGAGACAGAGACCGTGGGGCAAGTGGGCTGCTGAAATCAGAGACCCATTCAAAGCAGCAAGAGTGTGGTTAGGCACATTTGACACAGCTGAAGCCGCTGCCATAGCCTATGACGAATCTGCCCTGCGTTTCAGAGGCAACAAGGCAAAGCTCAATTTCCCCGAAAACGTGAGACTCCAGCAACCTCCCGCCATTCCTCCGGCCACCCAATGGAACATTTCGGCTTATCCTAGTAACCTGGTACCCGTTCCTGTGAGTCTATATGATCAGATGACTGGGTCAGCTACAATGGTTTCTAAACTTCAATCGTCCTTATGGCCACCGGCGTCGCCTTCATCATTTTCTACGCAGGAAGCTTCACAGCCTTCGCTTTAA 1227 0.4784 MNDARNSLIVAPTPTASTGQIFNCLVDQAKTLVDMAVNRGCYIDQSQSLNIHMDQPICMVDDLSLENILLIGSEQWDVLSRSRAAAEAIKFPVDISTLKKPRVEEQEDDTEMAQRALLREKTLATDDVGTISPGVEASNWKTSMHMLELNIGLASEKRNVRNLGVDREREMSAMVSALTHVVSGDVPRDYTLQHHSTYSSAVQGAAAVSASAAPSSSYVGTSALKRSREEVEPLGDFSRGGSSPAILTVGESSSTWREMGRMANAVDYYCTDNGREQPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAAIAYDESALRFRGNKAKLNFPENVRLQQPPAIPPATQWNISAYPSNLVPVPVSLYDQMTGSATMVSKLQSSLWPPASPSSFSTQEASQPSL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1658 408 CDD AP2 281 340 IPR001471 GO:0003700|GO:0006355
Glsi13g1658 408 PRINTS Ethylene responsive element binding protein signature 282 293 IPR001471 GO:0003700|GO:0006355
Glsi13g1658 408 PRINTS Ethylene responsive element binding protein signature 304 320 IPR001471 GO:0003700|GO:0006355
Glsi13g1658 408 ProSiteProfiles AP2/ERF domain profile. 281 338 IPR001471 GO:0003700|GO:0006355
Glsi13g1658 408 FunFam Ethylene-responsive transcription factor 2 280 339 - -
Glsi13g1658 408 Pfam AP2 domain 281 330 IPR001471 GO:0003700|GO:0006355
Glsi13g1658 408 PANTHER DNA-BINDING DOMAIN 255 365 IPR044808 GO:0003700|GO:0009873
Glsi13g1658 408 SMART rav1_2 281 344 IPR001471 GO:0003700|GO:0006355
Glsi13g1658 408 SUPERFAMILY PFL-like glycyl radical enzymes 5 67 - -
Glsi13g1658 408 SUPERFAMILY DNA-binding domain 281 339 IPR016177 GO:0003677
Glsi13g1658 408 Gene3D AP2/ERF domain 280 340 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1658 Glsi-ChrGlsi13 33083640 33092808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1658 164 346 AP2-EREBP Transcription Factor Family AT5G64750 48.756 4.37e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi13g1658 AP2 5.2e-13 CL0081