Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1656 ATGGATTTTGATGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCTGGAAGATCGAGATTTGTCGAAGAAGAAGAAGGATAGCGGCGAGAAGAGTGAAAGGAGTTACAGGAAGCGTGAGGTTGACGATAATCTGGATGCTGAAGACAGGAAGAGCAAGAGGTCCAGAGGCGACGAGGAGAATGGCTCAAGGAAGGATCGTGATGACCGCGACAGAGAACGGTCTAGTCGCGAAAAGGAGCGGCATAGGAGTGGTAGGGAGAGGGACGGAGAGCGAGATGGGGATAGAGAGCGAGAGAGGAGTAGTAGAGAGAAAGATAGGGAGAAGGAGAGAGACAAAGAGAGGGATAAGGATAGAGAGAAGGAAAGAGAAAGACGGGATAAAGAAAGGGAGCGGGAGAAAGAAAGAGAGAAGGAGAGGAGAGAGAGGGACAAAGAGAGGGAAAGAGAACGGGAGAGAAGGGAGCGGGAGAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGGGAGAAGGAGGAGAGAGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGATAGAGAACGAGAAATGGAAATGAGAGACAACCGGAGGTTTAGGGATAAAAAAGAAGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAGGCAACAGAAAGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATTATGGATAGGAACTCAAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCGATGGCAATTGCTCTCTCTGGTCAACTGCTTCTTGGACAGCCTGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCACTGGAGCTGCAGGTGTGGCTGGACCATATGGAGCAGTAGACAGGAAACTGTATGTGGGGAACCTTCATTTCAACATGACAGAGGTTCAGCTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTCGTGCAACTACCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGTTTTGTTCAATTTGCCCATCTTGAACATGCCAAAGCGGCTCAAAGCTTAAATGGAAAATTAGAGATTGCTGGTAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGATACAAGTGCGAAATCTGCAGACTTTGATGATGACGAAGGTGGATTGTCTTTAAATGCCCAATCTAGAGCATTGCTTATGCAGAAGCTAGATCGTTCTGGTATTGCCACAAGCATTGCAGGATCTATTGGTGTGCCCATTGCGAATGGGTCAGCTCCTGCTCAACAGGCTACTAGTTTGCCTAGTGCTTCAGGTGTAATGCCTGCAACAGCTCTCCCCACACAAATTATGCCTACCCCAGTGGTGGTAGAACCTGTTGGAATCCCTAGCGAGTGTCTACTATTGAAGAATATGTTTGATCCAACTGCTGAGACGGAACCAGATTTTGATGTAGACATTAAGGAGGATGTAGAAGAAGAGTGCTCTAAATTTGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGGTGCTCAACGTGCAATGCATATGCGATGGTTTGCACGTAGGTTGATTTCAGCTATCTACATGCAACCTCAGATATATGAAGCAAAGTTTAAAGGGGAAGCTTGA 1770 0.4633 MDFDEYDYLEKTVEELEDRDLSKKKKDSGEKSERSYRKREVDDNLDAEDRKSKRSRGDEENGSRKDRDDRDRERSSREKERHRSGRERDGERDGDRERERSSREKDREKERDKERDKDREKERERRDKEREREKEREKERRERDKERERERERREREKEKEKEKEREREKEERERSRRSRSRSDRDRDREREMEMRDNRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTEVQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTSAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIATSIAGSIGVPIANGSAPAQQATSLPSASGVMPATALPTQIMPTPVVVEPVGIPSECLLLKNMFDPTAETEPDFDVDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFETVEAASGAQRAMHMRWFARRLISAIYMQPQIYEAKFKGEA 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1656 589 Coils Coil 111 179 - -
Glsi13g1656 589 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 130 585 IPR006509 GO:0003723|GO:0005634|GO:0006397
Glsi13g1656 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 399 IPR000504 GO:0003723
Glsi13g1656 589 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 513 IPR029123 -
Glsi13g1656 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 288 IPR000504 GO:0003723
Glsi13g1656 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 571 IPR000504 GO:0003723
Glsi13g1656 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 393 IPR000504 GO:0003723
Glsi13g1656 589 MobiDBLite consensus disorder prediction 12 217 - -
Glsi13g1656 589 Gene3D - 152 303 IPR012677 -
Glsi13g1656 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Glsi13g1656 589 SUPERFAMILY RNA-binding domain, RBD 490 577 IPR035979 GO:0003676
Glsi13g1656 589 FunFam Splicing factor CC1-like 145 304 - -
Glsi13g1656 589 SUPERFAMILY RNA-binding domain, RBD 320 398 IPR035979 GO:0003676
Glsi13g1656 589 Gene3D - 317 413 IPR012677 -
Glsi13g1656 589 NCBIfam splicing factor, CC1-like family 103 585 IPR006509 GO:0003723|GO:0005634|GO:0006397
Glsi13g1656 589 FunFam Splicing factor, CC1-like protein 490 589 - -
Glsi13g1656 589 CDD RRM3_RBM39_like 494 576 - -
Glsi13g1656 589 CDD RRM1_RBM39_like 220 292 - -
Glsi13g1656 589 Gene3D - 490 588 IPR012677 -
Glsi13g1656 589 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
Glsi13g1656 589 SMART rrm1_1 496 573 IPR000504 GO:0003723
Glsi13g1656 589 SMART rrm1_1 322 395 IPR000504 GO:0003723
Glsi13g1656 589 SMART rrm1_1 220 292 IPR000504 GO:0003723
Glsi13g1656 589 MobiDBLite consensus disorder prediction 1 217 - -
Glsi13g1656 589 FunFam Splicing factor CC1-like 305 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1656 Glsi-ChrGlsi13 33042266 33048161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1656 301 394 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 3.47e-07 51.2