Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1650 ATGAAATCCGAATGCGAAAAGAGCATAGATCTGAGTTATGGACTCGGGAGCTGGAAATCACGCACACAGATCCGGTTCACACTCCGAGAGAATATCAAAATTTTCCAGGAAAGAATAGGCAACAAATATGAGAAGCTTCTGGGAGATGAATGGATTTGGGCTGTGAGTCAAAGGCATGTCCGTCCAGAAATTGCTCGGCCACAAAGAGTGCGAGTGAAGAGGAAGGAGAGTATGGCGAAATCACCTGAAAGCGAGCACCCACAAAAGGCTTTTGGTTGGGCTGCGAGGGATACTTCTGGGCTTCTTTCTCCCTTTCCGTTCTCTAGAAGGGAAATTGGGGCTGATGATGTTGCGCTGAAAATTCTTTTTTGCGGGGTTTGCCATTCGGATCTGCATACTATTAAGAACGAATGGGGTTTCACAACTTACCCCGTTGTTCCTGGTCATGAAATTGTTGGTGTTGTGACACAAACTGGGAATAATGTGAACAAATTCAATGTGGGCGATAAAGTTGGAGTTGGTGTCATAGTAGACTCCTGCAAGACATGTGATACTTGCCAGCAGGACCTGGAGAATTACTGTCGTCGGGTTGTATTTACCTATAACACTCCTGGCTTTGATGGGACAAGAACCTATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGGTTTGTACTCAGATTTCCTGAGAACTTACCCCTCGATGCTGGTGCTCCACTTCTCTGTGCTGGGATTACTGTGTACAGTCCGATGAAATATTATGGAATGACGGATCCTGGTAAACATTTGGGAGTAGCAGGGCTTGGTGGGCTAGGTCATGTTGCAGTGAAATTCGGCAAGGCCTTTGGGCTGAAAGTTACTGTCATTAGCAGCACTCCGAAAAAGGAAGCTGAGGCCATTAACAAACTCGGGGCTGATTCTTTCCTTGTTTCTACTGACCCTGCAAAAATGAAGGAAGCTATGGGAACCATGGACTTCATCATAGACACAATTTCTGCAGTTCATTCCCTGGTTCCATTGCTTGGTCTACTGAAGCTGAATGGGAAACTGATCACTGTGGGGTTGCCTGAGAAGCCGTTAGAGCTGCCTATCTTTCCTTTAGTTGCAGCACGGAAGCTTGTAGGGGGAAGTGACATTGGAGGGATGAAAGAGACACAGGAAATGCTTGACTTTTGTGGAAAGCACAATATAACTGCAGATATTGAGCTGATTAAGATGGACCAAATTAACACTGCCATGGAAAGGCTTGCCAAATCTGACGTGAAGTATCGCTTTGTGATCGATGTGGCAAACTCCTTATCAAAGTAG 1311 0.4569 MKSECEKSIDLSYGLGSWKSRTQIRFTLRENIKIFQERIGNKYEKLLGDEWIWAVSQRHVRPEIARPQRVRVKRKESMAKSPESEHPQKAFGWAARDTSGLLSPFPFSRREIGADDVALKILFCGVCHSDLHTIKNEWGFTTYPVVPGHEIVGVVTQTGNNVNKFNVGDKVGVGVIVDSCKTCDTCQQDLENYCRRVVFTYNTPGFDGTRTYGGYSDFVVVHQRFVLRFPENLPLDAGAPLLCAGITVYSPMKYYGMTDPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISSTPKKEAEAINKLGADSFLVSTDPAKMKEAMGTMDFIIDTISAVHSLVPLLGLLKLNGKLITVGLPEKPLELPIFPLVAARKLVGGSDIGGMKETQEMLDFCGKHNITADIELIKMDQINTAMERLAKSDVKYRFVIDVANSLSK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1650 436 Pfam Alcohol dehydrogenase GroES-like domain 115 227 IPR013154 -
Glsi13g1650 436 CDD CAD1 91 429 IPR047109 GO:0016616
Glsi13g1650 436 FunFam Putative cinnamyl alcohol dehydrogenase 6 401 430 - -
Glsi13g1650 436 Gene3D - 93 430 - -
Glsi13g1650 436 Gene3D - 244 400 - -
Glsi13g1650 436 SMART PKS_ER_names_mod 94 428 IPR020843 GO:0016491
Glsi13g1650 436 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 148 162 IPR002328 GO:0008270|GO:0016491
Glsi13g1650 436 PANTHER ALDEHYDE REDUCTASE 82 433 IPR047109 GO:0016616
Glsi13g1650 436 FunFam probable cinnamyl alcohol dehydrogenase 93 252 - -
Glsi13g1650 436 FunFam Cinnamyl alcohol dehydrogenase 244 400 - -
Glsi13g1650 436 Pfam Zinc-binding dehydrogenase 271 392 IPR013149 -
Glsi13g1650 436 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 233 398 IPR036291 -
Glsi13g1650 436 SUPERFAMILY GroES-like 99 262 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1650 Glsi-ChrGlsi13 33012274 33017635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1650 88 434 Monolignol Biosynthesis Gene Families AT2G21730 72.779 0.0 517