Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1649 ATGGACTTGGGCGATTTCCGATCCATATTGGAGACTGCAGGCGTCGACGTGTGGACGTTCATCGACACCGCAATCACCGTTGCTTCCTTGGATTACAGCAATGATTTGAAGCATCGCAGGGATGGAATCGTTGAGCGCCTCTATGCGGCCACTGCAGCTCCTATATCCTGTCGGAACTGCGAACCCAATCATACCAGGTCTAATGGCCGCGGAATCAGCGCTCCAATCGAGAAACAAAGCAGTCCTTCGGACGAAAGACGTGCTTCGCCTGCAACGCCGCAATCCCTTGGTAAAGACGAGGAGGTCGACCCCTATGGAGGCTTGTTCGACGATGAGCAGAAGAAGATTCTCGAGATTAAAGAGCAGCTTGAAGACCCTAGCCAGTCTGAAGAATCATTGGTGGAGTTGCTACAAAATCTTGCAGACATGGATATTACATTCCAAGCACTGAAGGAGACTGACATCGGGAGGCATGTAAATCGTTTGCGAAAGAATTCATCCAATGATGTTCGGAAATTGGTGAAGCTCCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTGAAGATAAATCAACCAGGAGAGCACACTTCTCTCATGGCTGATGGAGACTCGCCTCAGCAGAAAAACCCCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCACCTAATCCACACAATGGGAGTTCTGGGTCAGACCGGAACAATTTCGAAGCTGAACCAAGACCAAAAACCATTCCTCGAAAAGAAGCTCCACCAAAACCAGCTTCGTCAGTTCACATTCCTGCTTCTGCTCCTCAAAATAGACAGAGAGAACAGAGAGATATAAATTTTGACGCGGAGAGACTTGCTTCGGCAAGAAGACGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGATATCCATGAGCTACCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCAGCGGCGGTTCTCAGGGAAGGCACTGGTGA 1020 0.4804 MDLGDFRSILETAGVDVWTFIDTAITVASLDYSNDLKHRRDGIVERLYAATAAPISCRNCEPNHTRSNGRGISAPIEKQSSPSDERRASPATPQSLGKDEEVDPYGGLFDDEQKKILEIKEQLEDPSQSEESLVELLQNLADMDITFQALKETDIGRHVNRLRKNSSNDVRKLVKLLVRKWKDIVDEWVKINQPGEHTSLMADGDSPQQKNPQNGHHQIPDFAYSPNPHNGSSGSDRNNFEAEPRPKTIPRKEAPPKPASSVHIPASAPQNRQREQRDINFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNKGSGGSQGRHW 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1649 339 SMART TFS2_5 116 187 IPR003617 GO:0005634
Glsi13g1649 339 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 113 196 IPR035441 -
Glsi13g1649 339 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 339 IPR044790 -
Glsi13g1649 339 MobiDBLite consensus disorder prediction 320 339 - -
Glsi13g1649 339 MobiDBLite consensus disorder prediction 58 104 - -
Glsi13g1649 339 CDD TFIIS_I 113 186 - -
Glsi13g1649 339 MobiDBLite consensus disorder prediction 196 278 - -
Glsi13g1649 339 Pfam TFIIS helical bundle-like domain 136 185 IPR017923 -
Glsi13g1649 339 Coils Coil 283 310 - -
Glsi13g1649 339 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 110 199 IPR035441 -
Glsi13g1649 339 ProSiteProfiles TFIIS N-terminal domain profile. 111 188 IPR017923 -
Glsi13g1649 339 MobiDBLite consensus disorder prediction 202 239 - -
Glsi13g1649 339 MobiDBLite consensus disorder prediction 58 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1649 Glsi-ChrGlsi13 33010125 33012146 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi13g1649 Med26 1.2e-11 No_clan