Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1644 ATGCTGGAAATCTCGACTTCACCAGAAAATTCCGGAGCTCCCGAGGGGAGAGGTAGTGGGCCTGACTCTGATGGGTTCAAAGAGCAAAAGGGACTCGCAGGCGAAGAGGCAGACCGGAATTCCACCGCTAACCGGTGGCCTCAACAAGAGACAATGGCTTTGCTCAAGATAAGGTCTGAGATGGACGTTGCTTTCAGGGATATAAACCCCAGAGCTCCTCTTTGGCAACAAGTTTCAAGGAAATTAGCGGAGCTAGGATATAACAGGAGTGCGAAGAAATGCAAGGAGAAGTTTGAAAACATTTACAAGTACCATAGAAGGACCAAGGAAGGCCGTTATGGCCGACCTAATGCCAAGACTTACCGTTTTTTTGAGCAACTAGAAGCTCTAGCCAGCCACTTAGTCCTTCCGGAAAACAATCCCACAAAAGCAGAGGGCACAGCAACAACTACAAACCCAGTGGATCTACCCAATGTTGTTCCAGATGCCACTCCGTGCTCCATTAGATTCCCTAGTTCCACCAAAGAATCTGGGGAAGATGTATCAAAAAAGAACCGGAAGCTGACAGGGTTTTTCCAAAGGTTGGTGAAGGAAGTAATAGAGAAGCAAGAGACCCTACACGACAAGTTTATGGAGGTGTTAGAAAAATGCGAACAAGATCGAATAGCACGGGAGGAAGCATGGAAGATGCAAGCATTAGATCGGATTAATAGGGAGCGTGAGCTTTTGGCTCAAGAAAGATCTGTTGCAGCAGCAAAGGATGCGGCGATGCTTGCCTTTCTGAAAAAGTTCACAGAACAAGCAGGCCCAGTGCAATTACCCGAGAATATTGCGGTTCAGCAGAACCTGATTCCAGATCATGATAAGGATAAGGGTAATGAAATTGAAGGCACTGTTATGGACAAGCAAGAATGTACAAATGTTGAGAATTTCATACAGATGAGCTCCTCACGTTGGCCCAAAGACCAAGTGGAAGCTTTGATTAGATTGAGGACAAACCTGGATATGCGGTATGAAGGAAATGGACTGAAAGGACCTCTATGGGAAGAGATATCTACCGCAATGAAAAAGCTTGGCTATCATCGCAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAATAAATACTTTAAGAGGATGAAGGGCCAAAATAAGAGAAGGCCCGACGATTCAAAGACTTGTCCTTATTATCACCAGCTCGAAGCTTTATATAGTAAAAAACCTAGAACGGTCCAAGAATCAGCTGGTTTTGCACCTAACGAGTTGAAGCCCGAGGAGCTATTAATGCATATTATGAGTGGTCAAGAAGAGCGACAACAGCTGGAGTCGTCATCCGAGGATGCTGACAGGGAGAAAAATTCGAACCAGATTGAAGGAGATAAGGAAGATGGGGATGAAGATGGATATCATATGGCAGCCAGTAGCAGTTCAATAGCAATCACGGAAATAAGCTTCTTGTTGTTGAGACAAGCAAACAACCTAAGTGTATCCATGGCGGACTGTGATAGCCAGCACCAGCACCAGCACCAGCAACGTCACCAGCAATCAGCTGTCCCAAAAGAGACAGCTCTCCAAGCCTTGAACACCATAATCCAGCTGCATTTCGAGAAGACCCTCGAGAAGAAGCGTGCCATAGACATTCAAAAGAAGCAGCTTCACAAACTCTTCCAGATTTTCTTCATCTTCTTAACTTTAGTATTGTTGGCCCAAACCCAGTCGCCTCGTCTCCAATGCCGCCATTGTTGGATCCCTATCACCCTCCTCTCCCTGGCCCACCTCCTCTTCTACGTCTCGGTGGCCCAGACCCTCAGGTGCATCAACGGCTTCAAGTACCAGAGGCGGTGCCACAAGCTCACACTTGGGTTGGCAACGCAGAAGCTGAGGGAGATGAAGATGAAGTTGAGTGGCAATGAATACGAGGGGATTGGGGACGATGAGTTTGAGATTCAGTACCAGGAACCCCCCGAGAGCTATTTTGGTAAGTTCAAGAGGAATTGGGCTCTTCATTTTGGGTTCTTGATCTTGATCTACGGGTTTATGATCTCCTCCTCTGTCATTGTTCTTTGTTTCTAA 2076 0.4644 MLEISTSPENSGAPEGRGSGPDSDGFKEQKGLAGEEADRNSTANRWPQQETMALLKIRSEMDVAFRDINPRAPLWQQVSRKLAELGYNRSAKKCKEKFENIYKYHRRTKEGRYGRPNAKTYRFFEQLEALASHLVLPENNPTKAEGTATTTNPVDLPNVVPDATPCSIRFPSSTKESGEDVSKKNRKLTGFFQRLVKEVIEKQETLHDKFMEVLEKCEQDRIAREEAWKMQALDRINRERELLAQERSVAAAKDAAMLAFLKKFTEQAGPVQLPENIAVQQNLIPDHDKDKGNEIEGTVMDKQECTNVENFIQMSSSRWPKDQVEALIRLRTNLDMRYEGNGLKGPLWEEISTAMKKLGYHRSAKRCKEKWENINKYFKRMKGQNKRRPDDSKTCPYYHQLEALYSKKPRTVQESAGFAPNELKPEELLMHIMSGQEERQQLESSSEDADREKNSNQIEGDKEDGDEDGYHMAASSSSIAITEISFLLLRQANNLSVSMADCDSQHQHQHQQRHQQSAVPKETALQALNTIIQLHFEKTLEKKRAIDIQKKQLHKLFQIFFIFLTLVLLAQTQSPRLQCRHCWIPITLLSLAHLLFYVSVAQTLRCINGFKYQRRCHKLTLGLATQKLREMKMKLSGNEYEGIGDDEFEIQYQEPPESYFGKFKRNWALHFGFLILIYGFMISSSVIVLCF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1644 691 CDD GT1 44 109 - -
Glsi13g1644 691 MobiDBLite consensus disorder prediction 1 47 - -
Glsi13g1644 691 FunFam Trihelix transcription factor GT-2 46 107 - -
Glsi13g1644 691 MobiDBLite consensus disorder prediction 21 35 - -
Glsi13g1644 691 CDD GT1 317 382 - -
Glsi13g1644 691 MobiDBLite consensus disorder prediction 441 470 - -
Glsi13g1644 691 ProSiteProfiles Myb-like domain profile. 317 375 IPR001005 -
Glsi13g1644 691 SMART sant 42 104 IPR001005 -
Glsi13g1644 691 SMART sant 315 377 IPR001005 -
Glsi13g1644 691 FunFam Trihelix transcription factor GT-2 319 380 - -
Glsi13g1644 691 ProSiteProfiles Myb-like domain profile. 38 102 IPR001005 -
Glsi13g1644 691 Coils Coil 432 452 - -
Glsi13g1644 691 Gene3D - 46 107 - -
Glsi13g1644 691 Gene3D - 319 380 - -
Glsi13g1644 691 Pfam Myb/SANT-like DNA-binding domain 44 130 IPR044822 -
Glsi13g1644 691 Pfam Myb/SANT-like DNA-binding domain 317 404 IPR044822 -
Glsi13g1644 691 MobiDBLite consensus disorder prediction 436 471 - -
Glsi13g1644 691 PANTHER FI21293P1 22 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1644 Glsi-ChrGlsi13 32963903 32968263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1644 32 408 Trihelix Transcription Factor Family AT1G76880 43.681 3.25e-112 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi13g1644 Myb_DNA-bind_4 6.7e-21 CL0123