Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1640 ATGTACGCTTCTACTTCCTCTACTGCCCTGCTTTTCCACTCAAGAAGGTTGCTCCTTCACAAACCACTTAACCAATCAGCAGCTTCCTTAAACTCTTCAGAGTCTGATCTTAGGGATGGAAACTTTGACGCAAATGTTATTATGGTACTCTCAGTCCTACTGTGTGCTCTTATTTGCTCACTGGGGTTGAACTCCATCATCAGGTGTGCATTAAGGTGTTCGAATTTATTCATCAGTGACTCGGGGAACAACCCTCCAGCTCGATTGGCCAACACAGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCCCACAGTGAGCTACTCAGCAGAGTTGGAACTGCCAGGTTTGGATACAGAGTGCGTGATATGCCTGTCAGAGTTCAGCAATGGCGATCGTGTGCGCATTTTGCCCAAGTGCAACCATGGCTTCCATGTCCGCTGCATTGACAAATGGCTAAGTTCACACTCATCTTGCCCTAAGTGCAGACAGTGCCTCATCGAGACTTGCCAAAAGATTGTTGGGTGCAGCCAGGCTAGCTCATCCCATAATTCCCAACCACCTGTGCTGCCAATCCCAGAAACCACTGTAAGGATTGCTCCGCTACAACCAGAAGGTTTGGTGCGCAACTACAGGGAAGTTAGCTAA 645 0.4806 MYASTSSTALLFHSRRLLLHKPLNQSAASLNSSESDLRDGNFDANVIMVLSVLLCALICSLGLNSIIRCALRCSNLFISDSGNNPPARLANTGVKKKALKTFPTVSYSAELELPGLDTECVICLSEFSNGDRVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSQASSSHNSQPPVLPIPETTVRIAPLQPEGLVRNYREVS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1640 214 FunFam RING-H2 finger protein ATL73 82 167 - -
Glsi13g1640 214 SMART ring_2 120 161 IPR001841 -
Glsi13g1640 214 SUPERFAMILY RING/U-box 98 167 - -
Glsi13g1640 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Glsi13g1640 214 PANTHER RING-H2 FINGER PROTEIN ATL78 12 206 IPR044602 GO:0016567|GO:0016740
Glsi13g1640 214 CDD RING-H2_EL5-like 119 162 - -
Glsi13g1640 214 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Glsi13g1640 214 Pfam Ring finger domain 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1640 Glsi-ChrGlsi13 32948210 32948854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1640 16 166 C3H Transcription Factor Family AT3G10910 48.428 1.33e-44 145