Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1637 ATGAGTGGGATGGATTGTGAGCGTATTGATCACTCATTTCGCCCCTCCTACATGTGTCAACTCCATGAATATAGCTTTGATAATTCATTTCCATTCCAAACAGAAGATCATCTCTTATCTCCGGACACCATCCAAGACGAAATGTTCGACCAAGAGTTTGTTGAAGGATTGTTCCAGCAGGCACAAACAGAGCTTCCGGACTTTGATCTCATGAATTGTAACGAGTCACTGGGGCTAGAGACAGAGTTGAGTCAAGAAGTTACCCTGAGATCCCAGGAAAATGTGCACGTTTCAACGGATGGGGATCCTCATTTGATGGGAATTCAAGCAGAGCTAATGGAAGAGAACAGTTTAGCTGATCTCCTGCTGACAGGAGCCGAAGCTGTTGAAGCACAGAATTGGCCTCTCGCCTCGAACATAATTAGGAAGCTTAACAATGATTTGTCAGAAAATGGAGATAGTATTTTGAACAGGTTGGCTCCTTTCTTCACTCAAGGTCTGCATTATAAAAGCATAAATGCTCCGGGGGTGGAATATGACCCTGTCTCTACACAGACAAACACTTTCTCCGCCTTTCAGATACTCCAGGAACTCTCTCCGTATCTAAAATTTGCTCATTTCACTGCGAACCAAGCTATCTATGAAGCCACGGAAGGTGTTAAGGAGGTCCATGTCATTGACTTTGACATTATGGAGGGAATACAGTGGCCACCTTTGATGGTCGACCTTGCAATGAGGAAGGATACTTCCCTCAGAGTAACAGCCATAGTGGACCATCAAAGTGCAACCTTTGTCCAACAAACAGGAAGAAGATTAAAAGAATTTGCTGCTTCAATCAATTTCCCATTCACTTTCGATCAGATAATGATTGTTAGGGAAGAAGATTTTCAAAGAATCTTATTGGGTCCTATACTTGTAGTCAATTGTATGATACACCAGTGGACGCGCAAAAGGAGTTTATCCTCGGTTAAAACTTTCTTGGATGGTGTAAGCAAATTATCACCTAAGCTTGTTATTTTAGTAGAAGATGAACTGTTTAATTTGTGTAGACTCAAATCCATGTCCTTCGCGAAGTTCTTCTGCGAGGCTTTGCACCATTATACAGCAATTTCTGATTCACTTGCGAGTAGTTTGTGGGGTGGGTACAAGATGGGGTTAACCCAGTTAGAAAAAGAGGTTTTGGGGATCAGAATTATAGACAGCGTGACGCACTTTCCTAGTGAAAGGGAGGAGAGAATTTTGTGGGAAGAAAGGTTTAATTCCTTGAAAGGATTTAAGCGAGCTCCTGTGAGTAGTTATAATATTTCTCAAGCCAAGTTCTTGGTAAGTCTGTTTGATGGAGGGTATTGGGTGCAATACGAGAAAGGCAGATTGGCTTTGTGTTGGAAGTCTAGGCCTTTGACAGCGGCTTCAATTTGGAACGGTGCCGTTGTCAGTTGGGTTGCAACAGAAATGGAATCTGAAGCCGAGTTTATCATCTCCCAAAACGTTAGGGTGGGAGACTATATTCTGAAGATGAAAATCGGGGAGGGTTCTTTCTCCACAGTGTGGAGAGCCGAGCACATATTTGGTGGCGAAGAAGTGGCGTTGAAACAAGTGTGCCTTTCCAAACTCAATCGGCGCCTCAAGAGCAGTTTGGACTGCGAGATCAATTTCTTGTCCTCTGTCAATCACCCTAATATAGTTCGCCTTCTCGACTTCTTCCAGGTTGATGGATGTTTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGAAATTTGGCTTCTTATATTCAGCGGCATGGGAGAGTTCAAGAACAAACTGCCAGAAAATTCATGCAGCATCTTGGCTCTGGTTTAAAAATATTACACTCTCATGACATCATTCACAGGGACTTGAAGCCAGAGAACATTTTGCTATCAAGCCATGGGGGTGATGCAGTGCTAAAGATAGCTGATTTTGGTCTATCAAGAACTTTACACTCGGGTGAGTATGCTGAGACAGTTTGTGGGTCTCCATTATACATGGCTCCAGAAGTTCTTCAGTTCCAGGGATATGATGACAAGGCAGACATGTGGAGTGTTGGTGCCATTCTATTTGAGCTTCTAAATGGCTACCCACCATTTAATGGAAGTAATAATGTTCAGCTGTTGAAGAATATCAGATCTTGTACCTGTCTTCCATTTTCTCAGCTGATCCTTTCAGGATTAGATCCTGACTGTCTTGATATATGTTCTAGACTACTGTGCTTAAATCCAGTGGAGCGCCTATCTTTTGATGAATTTTATTGGCATAGGTTTCTAAGAAAAAACAGAAGAGGAAAATGGTCGCTTGGTTTATGCTCAAGGGGTGAGGGTGTGATGGGGTTGGGTGGAGATCTTAACTTTGATTTCCATGTAAACCAAAAGAAAGAGAGAAAATTTGTTACTTGTACAGGATCGTCAAGTATATCAAATCAGACGCGATTGAAAATTCTAATTGATAAGCTGAAGAAGTCAATAGAGAAAGAGCCGGAAACAAAAAATATGCTAGAGGATTACTGCTCTGAGACTGACAGAGAAGCAAGTGATTATCTGTCAAATACTGAGCTGTCACCAAAAAGCTTGCCTATACTAACCAGTAAATATCAGACGGCTGCTGGTCGTAAACACGTCCGTGTAATCCTTTCTGATGATGATGATTATGATTACGATGAGACGGAGTGTTCAAACAGAAATGTTCATGATCCCTTGTTTGAGGATTTTACCACCTCAGATGCAATTGAGAGTACAAAAAGTGCTGCCAGTCCTGCTGGTAAAGTTCAGATTGATTCGGAGTATGGATCCAAATGTCCAGTTGATGTTGAGGAAAGCAGGAGTCCTAATAGAGCCAGTTTGTTGCCCATTTTTCAACACTTAAAATGTGTTGGAAGAGATCTGGAATCCCTGGAGTTGGAATCTGTCAAAAATATTAGGGAATATCTGGGACATGACATGGTTGAAGCTTCCATTGATAGATGGATTCAAAAGCGCCTTATAACAATGTACATGGACAGCTGCAAGGAGTTGTCTTTTTTTTTTGTACAAGAAAAGGAGCCCAAAGGACTACAAGTAGCAGATCTTTGGGGATGTAAGACCCTCAGATCAAGCCTAGCCCACTTGGAGGTCTCTCAAATAAAGCTTCTGATCTGTTCTACCATTTCTCCACACAATGGCTCTCAGAGCATCTCTGTGTGCATAGATCCACCACGATTGGCCTGGGATGGACGTGGATCTCATGATGTCTTTGGCCGCCATCATGGGGCCTATAGTTGTGTCCTCTCTAGGCATGGGCTTGCTATTTTGGATGTTAGACTTGGAGAGGTCTACCAAGGCCCCTCAGTTTATGTTTGGGCCGCTGCTACTCGTGTTTTAGTCTAG 3375 0.4273 MSGMDCERIDHSFRPSYMCQLHEYSFDNSFPFQTEDHLLSPDTIQDEMFDQEFVEGLFQQAQTELPDFDLMNCNESLGLETELSQEVTLRSQENVHVSTDGDPHLMGIQAELMEENSLADLLLTGAEAVEAQNWPLASNIIRKLNNDLSENGDSILNRLAPFFTQGLHYKSINAPGVEYDPVSTQTNTFSAFQILQELSPYLKFAHFTANQAIYEATEGVKEVHVIDFDIMEGIQWPPLMVDLAMRKDTSLRVTAIVDHQSATFVQQTGRRLKEFAASINFPFTFDQIMIVREEDFQRILLGPILVVNCMIHQWTRKRSLSSVKTFLDGVSKLSPKLVILVEDELFNLCRLKSMSFAKFFCEALHHYTAISDSLASSLWGGYKMGLTQLEKEVLGIRIIDSVTHFPSEREERILWEERFNSLKGFKRAPVSSYNISQAKFLVSLFDGGYWVQYEKGRLALCWKSRPLTAASIWNGAVVSWVATEMESEAEFIISQNVRVGDYILKMKIGEGSFSTVWRAEHIFGGEEVALKQVCLSKLNRRLKSSLDCEINFLSSVNHPNIVRLLDFFQVDGCLYLVLEFCAGGNLASYIQRHGRVQEQTARKFMQHLGSGLKILHSHDIIHRDLKPENILLSSHGGDAVLKIADFGLSRTLHSGEYAETVCGSPLYMAPEVLQFQGYDDKADMWSVGAILFELLNGYPPFNGSNNVQLLKNIRSCTCLPFSQLILSGLDPDCLDICSRLLCLNPVERLSFDEFYWHRFLRKNRRGKWSLGLCSRGEGVMGLGGDLNFDFHVNQKKERKFVTCTGSSSISNQTRLKILIDKLKKSIEKEPETKNMLEDYCSETDREASDYLSNTELSPKSLPILTSKYQTAAGRKHVRVILSDDDDYDYDETECSNRNVHDPLFEDFTTSDAIESTKSAASPAGKVQIDSEYGSKCPVDVEESRSPNRASLLPIFQHLKCVGRDLESLELESVKNIREYLGHDMVEASIDRWIQKRLITMYMDSCKELSFFFVQEKEPKGLQVADLWGCKTLRSSLAHLEVSQIKLLICSTISPHNGSQSISVCIDPPRLAWDGRGSHDVFGRHHGAYSCVLSRHGLAILDVRLGEVYQGPSVYVWAAATRVLV 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1637 1124 ProSiteProfiles GRAS family profile. 109 474 IPR005202 -
Glsi13g1637 1124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Glsi13g1637 1124 Pfam Protein kinase domain 503 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1637 1124 ProSitePatterns Protein kinases ATP-binding region signature. 508 531 IPR017441 GO:0005524
Glsi13g1637 1124 CDD STKc_ATG1_ULK_like 508 759 - -
Glsi13g1637 1124 FunFam Serine/threonine-protein kinase ATG1t 495 775 - -
Glsi13g1637 1124 Gene3D Transferase(Phosphotransferase) domain 1 494 835 - -
Glsi13g1637 1124 SMART serkin_6 502 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1637 1124 Pfam GRAS domain family 119 473 IPR005202 -
Glsi13g1637 1124 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 488 950 IPR045269 GO:0004674|GO:0006914
Glsi13g1637 1124 SUPERFAMILY Protein kinase-like (PK-like) 498 761 IPR011009 -
Glsi13g1637 1124 ProSiteProfiles Protein kinase domain profile. 502 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1637 Glsi-ChrGlsi13 32922943 32936755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1637 494 762 CBL-interacting serine-threonine protein kinases AT1G01140 36.823 1.41e-47 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Glsi13g1637 GRAS 7.3e-78 CL0063
TF GRAS Glsi13g1637 GRAS 7.3e-78 CL0063