Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1634 ATGGTGAGGGATGATCTGTATATCACAGTTCCCAGCTTCTTTAGGTGCCCCATATCGCTCGACGTCATGAAGTCCCCTGTGAGCCTTTGCACCGGAGTTACCTATGACCGTTCCAGCATTCAACGCTGGCTTGACGACGGTAACAACACCTGCCCCGCAACCATGCAGCTGCTCCACACCAAGGAATTTGTTCCTAACCATACTCTTCAGAGGCTTATCCAGATCTGGACTGACTCCGTTCGCCACCGACTCGAATCTGCCGAGTCTCCGGTTACCAAATCCGTCCCTTCCCAAAACCAAGTCCTCGACGCCATCAGAGATATGGACACCCAGAGAGGAAACCGATTCGATTGCCTCACCAAAATTCTATTCTTTGCCCAAGAATCTGAAGAAAACCGCGAATTCCTTGCCAAAGTAGACGGCTTAGTTCCTTTGCTCGTTGGTTTCCTCGACAATGTCGATGGCGGAGTTACCGGGAGAGTTGAAATTCTCGAAAAAGTTGTCAAAGCTTTGGATTTGGTTCTAAATAAAATCGAAGATCGTGAGCCATTGAAAAACTCGATGTTGAAGAGCCAACAAGGCAATTGCTTAGCTTCTCTGCTTCTTGTTCTGCAACAAGGCAGCTCCGATTCGAGAATTGCATCGGCTAAAATTTTGAAATCCACCGCTGCGGATGCCGAGTCCAAGCTGTTGATCGCCGAAAAGGAAGGCCTACTATCCGAATTGCTTAAATTAATCACGCCGGACAAGGATGCGGTTGTAATCGAGAACGGCTTGTCGTGCTTGGTTGCAATCTCAACGCCGAAACGAAACAAGATGAAACTATTCCATCTCGGAGCTGTCAAGACACTCTCGGATTTACTCTCGGAGTCAAAGTGGAGCGTTTCCATTACGGAGAAGGCACTGAAACTGCTGGAAACGGTGTCATCCACCAAGGAAGGAAGGTTGGAGATTTGTGAGGATCCAAATTGCGTGCCGGCGATATTGCAGAAGGTTCTGAAAATATCGAGTGTGGCAACGGAGCACGCAGTGACGATCCTATGGAGTGTATGTTATCTATTTCGTGATCAGAAGGCGCAGGAAGCTGTGACGAAGGCCAACGGTCTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGTTCACCGCCAGTTCGTCAAATGTGCGCAGATTTGCTTAAGATTTTTCGGGTCAACTCAAAATCCTGCCTTTCTTGCTACCATACTAAGACCACCCATATCATGCCCTTTTGA 1251 0.4812 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQLLHTKEFVPNHTLQRLIQIWTDSVRHRLESAESPVTKSVPSQNQVLDAIRDMDTQRGNRFDCLTKILFFAQESEENREFLAKVDGLVPLLVGFLDNVDGGVTGRVEILEKVVKALDLVLNKIEDREPLKNSMLKSQQGNCLASLLLVLQQGSSDSRIASAKILKSTAADAESKLLIAEKEGLLSELLKLITPDKDAVVIENGLSCLVAISTPKRNKMKLFHLGAVKTLSDLLSESKWSVSITEKALKLLETVSSTKEGRLEICEDPNCVPAILQKVLKISSVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPPVRQMCADLLKIFRVNSKSCLSCYHTKTTHIMPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1634 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Glsi13g1634 416 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 318 IPR000225 GO:0005515
Glsi13g1634 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Glsi13g1634 416 Gene3D - 102 403 IPR011989 -
Glsi13g1634 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Glsi13g1634 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Glsi13g1634 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Glsi13g1634 416 SUPERFAMILY ARM repeat 118 396 IPR016024 -
Glsi13g1634 416 SUPERFAMILY RING/U-box 5 79 - -
Glsi13g1634 416 Coils Coil 216 236 - -
Glsi13g1634 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Glsi13g1634 416 CDD RING-Ubox_PUB 11 63 IPR045210 -
Glsi13g1634 416 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1634 Glsi-ChrGlsi13 32899027 32900277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1634 1 416 U-box Gene Family AT5G64660 54.460 1.70e-149 429