Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1632 ATGCTTAGCTCTGATGAAGGAGATATTGAAATATTCTTCGACTCAGCGGATTTTCTGTCACCTCGAGAGTCTGTTGTAGCGAAAGAAGAGTTAGGTTGTGACAAGTTCGGTTATGAAATTTGGGTGAATGAGCCTCAGAGTGTGAAGGAAAGACGGGAACATTTTCTACAGGGAATGGGTTTAGCTGATATTTCTTCCGGCGTTTGTTCTCAAGAGAGGATGAGGGACTGCGGAGGTGCAGTCTCAAACGCCTGCAGTTTGCCTACTGATCAAATACACGAGAAAACAAACGTCTTGTTGGATGAACTGAAAGGTTGTCCGGAAGATAAAGCGGATGTAAGTTTTGAAAGGAAGGTGTATGAGCTCTCTTCTTCAGGTCAGGAACACAGACGTACAGAAGTTCAGTCCCAAGAAGAATATAGGCATTTCGATATGGGGAGAAAGAAAATGAAAAACTGGTGGAAGCGCTTTGTAAAAAAAGGGAAAGGATTTGGAGGCAAAGTCAGATCAAATTTGAATACAGCTACAGATATAACTCGTAGAATATATGTAAGGCAGAATAGAAAGAGGTGGATGGAGTTCAGTGCCTTGTACTTTGGACAAAAGATCAGAGCGCACAAAGGCCTAATCTGGACTATGAAATTTAGTCCCAATGGGCAGTATCTAGCTAGTGGAGGTGGGGATGGGGTAGTACGCATATGGCGTGTTATATCACTCGATACATCCAACATTTGCTTCACTGCTGAAGACAGTACTCTAATTAGCAAAGCGAAACAGGATATCAACTGTGCTTGGAAGAAACAGTCAAACCAATCCTTCATAGTCCTTCCAAACAAGGTTTTTCAAATTGAGGGATCACCACTGCAAGAATTTTATGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTGATTCAGATGTTCTACTTTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGGTTGCCATGAATGTCTGAGTGTATTCCGACACAATGATTATGTGACGTGCATCCAATTCAATCCGGTTGATAAAAATTACTTCATCAGTGGGTCTATAGACGGTAAAGTTCGAATATGGGGAGTATGTGAACAGCGAGTTGTTGACTGGGCAGATATAGGAGATGTGATAACTGCTACAAGTTACCAGCCAGATGGAAAAGGGTTTGTAGTTGGTTCTATTGCAGGCGCTTGTCGCTTTTATGTTGCGTCTGGCAAACATTTCCAGCTTGAGGAAGAGATATGGGTTTGTGGAAAGAAGAAAACATCTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGAAAAAACACAAGAGAGTTATGATCACATCGGAAGATTCCAAAGTTCATGTACTGGATGGCATTGAACTTGTCCAGAAATTTCGAGGTCTTCCAAAGTCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGAAAACATATAATTTCGGTTGGAGATGACTCCCATGTGTATATTTGGAACTTTAATGACTTGGAAAATCCATCATCCAAATCCAAACACATAAAATCTGAGCGTTCCTGTGAGTACTTTTTTAGTGAAGGCGTTACTGTTGCAGTACCTTGGTCAGGCACTGGCAGTAATTATGAACAACATCACCAAGAGGCTTCTCCTGGTGTAAGAGATTCGGGGCGTTTTTCTCTTGGTAATTGGTTCGCCATTGATGGAACATGCCGAGGTTCTGTGACATGGCCTGAAGAGAAACTTCCTAGCTGGGATTTACCCTTTGCAGAAGATGAATATGATCCCCAGCACCATGATTACCGGCTGTGTCAAGGCAGAGGTCTATCCGAAACATGGGGACTGTCCCTAGTGGCAGCTGGTTTAGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTCAGGCTTTAG 1908 0.4251 MLSSDEGDIEIFFDSADFLSPRESVVAKEELGCDKFGYEIWVNEPQSVKERREHFLQGMGLADISSGVCSQERMRDCGGAVSNACSLPTDQIHEKTNVLLDELKGCPEDKADVSFERKVYELSSSGQEHRRTEVQSQEEYRHFDMGRKKMKNWWKRFVKKGKGFGGKVRSNLNTATDITRRIYVRQNRKRWMEFSALYFGQKIRAHKGLIWTMKFSPNGQYLASGGGDGVVRIWRVISLDTSNICFTAEDSTLISKAKQDINCAWKKQSNQSFIVLPNKVFQIEGSPLQEFYGHSSDVLDLAWSDSDVLLSSSMDKTVRLWQIGCHECLSVFRHNDYVTCIQFNPVDKNYFISGSIDGKVRIWGVCEQRVVDWADIGDVITATSYQPDGKGFVVGSIAGACRFYVASGKHFQLEEEIWVCGKKKTSGNKITGIQFSQKKHKRVMITSEDSKVHVLDGIELVQKFRGLPKSGSQMSGSFTSSGKHIISVGDDSHVYIWNFNDLENPSSKSKHIKSERSCEYFFSEGVTVAVPWSGTGSNYEQHHQEASPGVRDSGRFSLGNWFAIDGTCRGSVTWPEEKLPSWDLPFAEDEYDPQHHDYRLCQGRGLSETWGLSLVAAGLDGTIKTFHNFGLPVRL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1632 635 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Glsi13g1632 635 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Glsi13g1632 635 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Glsi13g1632 635 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Glsi13g1632 635 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Glsi13g1632 635 SUPERFAMILY WD40 repeat-like 199 520 IPR036322 GO:0005515
Glsi13g1632 635 PANTHER WD REPEAT DOMAIN 44 114 632 IPR040324 -
Glsi13g1632 635 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 363 - -
Glsi13g1632 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 236 IPR001680 GO:0005515
Glsi13g1632 635 FunFam WD repeat-containing protein 44 187 532 - -
Glsi13g1632 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 363 IPR001680 GO:0005515
Glsi13g1632 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 323 IPR001680 GO:0005515
Glsi13g1632 635 SMART WD40_4 366 405 IPR001680 GO:0005515
Glsi13g1632 635 SMART WD40_4 457 498 IPR001680 GO:0005515
Glsi13g1632 635 SMART WD40_4 284 322 IPR001680 GO:0005515
Glsi13g1632 635 SMART WD40_4 416 456 IPR001680 GO:0005515
Glsi13g1632 635 SMART WD40_4 325 364 IPR001680 GO:0005515
Glsi13g1632 635 SMART WD40_4 196 235 IPR001680 GO:0005515
Glsi13g1632 635 Pfam WD domain, G-beta repeat 203 234 IPR001680 GO:0005515
Glsi13g1632 635 Pfam WD domain, G-beta repeat 285 321 IPR001680 GO:0005515
Glsi13g1632 635 Pfam WD domain, G-beta repeat 327 363 IPR001680 GO:0005515
Glsi13g1632 635 Gene3D - 193 535 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1632 Glsi-ChrGlsi13 32888159 32890956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1632 285 495 U-box Gene Family AT2G33340 27.928 1.11e-07 52.8