Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1625 ATGGCCTCTCTCGTCTGCATTGCTTTTCTTTCTTTCTTTCTCTTCCTCGTAATCTCATCCGCCTCCCACCAACGCCATTCTTCCTTAACTTCCTCCAAACTACCAGACCCCCAGCCCCAGCCCCCCATCCCTTCCGCTATACCCGAAATCCATCGGGCCTGCAATGCCACCCGCTTCCGCCAGATATGCGAATCGTCTCTTACTCAATCCAATCACGTCCCTTCCGACCCCACCCCGCTCCAAATCCTCCAATCCGCCATTAAGCTCTCCTCCGATAACCTCAACACCGCCCAATCAATGGTCCAAACCATCTTGGACTCCGCCGACAACAATCGCAACCGCACCATGGCTGCCAAGAGCTGCCTCGAGGTGCTACGTTACTCCGAGTACCGCATTTCCCTCGTCAATGACGCCCTCCCACGCGGCAAGGTCAAGGACGCCCGGGCTTGGATGAGCGCCGCGTTGGCCTACCAGTCCGACTGTTTGTCCGGGTTGAAGTACGTCAACGACACCAGCGTTGTGGCTGATACGATGACCTTCTTGGACTCCCTCACCCGCCTTTCCAGTAACGCGCTCAGTATGATGGTGTCGTACGATATATTCGGGAATGAAACTGAGACGTGGAGGCCCCCCATGACGGAGAGTGATGGGTTCTGGGAGGCATCGGGGTCGGGCGACAAGAAGGGGTTGGGCTTCAGGGGTGGGTTACCGATGAACTTGATGCCGGAAGCTATCGTTTGTAAGAACGGAGGCAATGGGTGTAATTACAAGACGGTGCAGGAAGCCGTTAACGCGGCGCCGGATAACGCCACCAGCAGGTTTGTGATACACATAAAAGAAGGAGTCTATGCGGAGAAAGTTCGGGTTCCGTTTGAGAAGAAAAATGTCATATTTTTGGGAGACGGCATGGGCAAGACGGTCATCACAGGGTCTTCTAATGTAGGGCAGCCTGGGATGACAACCTACAACTCGGCTACGATGGGGATTCTTGGCGATGGATTCATGGCAAAGGATCTGACGATAGAAAACACAGCAGGTGCTGGTGCTCATCAAGCAGTAGCCTTCAGATCAGACAGCGATATGTCTGTGCTTGAGAACTGCGAATTCGTAGGCAATCAAGACACTCTTTACGCTCATTCCCTGCGCCAATTTTACAAATCATGCCGCATCGTGGGGAATGTGGATTTCATATTTGGGAACTCAGCTTCGTTTTTCCAAGACTGCAAAATCTTAGTGACTCCGAGGGAAGAGAACCCAGAAGCGGGGGAGACCAATGTCATCACAGCACAAGGCAGGACAGACCCTGCTCAGTCAACGGGGTTTGTGTTCCACAACTGCGTGGTGAATGGCACTGATGAATATGTGGCACTGTATAAAAGCAAGCCTCAAGTGCATAAGAACTTCTTGGGGAGGCCATGGAAGGAGTATTCTAGAACGGTTTTCATTCAGTCTGAGTTTGCGGCTCTCATCACACCACAGGGTTGGATGCCATGGTCTGATGATTTTGCGCTCAAGACACTTTACTACGGGGAATTTGAGAATTCAGGACCTGGTTCTAATATGAATCAGAGAGTGCCCTGGAGTAGAAAAGTCCCGGCTGACCATGTCTCCACATATTCAGTGCAAAATTTTATTCAAGGAGGTGATTGGATTCCATCACCTCAGCATCGAAATAATAATAATAATAATAGAGGCAGAGTGAGTATCATCATCTATGGCCATGTAAAGTGTCTTTTTGTAGATTTTGACAAGGCTGTCCATCCAACAGAACTAATTAAGAAGAAAACCCATTATGGTCACCCCCATCGCTCTGAAACGAGAGTTGTTGGCGTTGGTTGTCGATCAGGGCAAGCAAAAGAAGCTTGA 1866 0.5048 MASLVCIAFLSFFLFLVISSASHQRHSSLTSSKLPDPQPQPPIPSAIPEIHRACNATRFRQICESSLTQSNHVPSDPTPLQILQSAIKLSSDNLNTAQSMVQTILDSADNNRNRTMAAKSCLEVLRYSEYRISLVNDALPRGKVKDARAWMSAALAYQSDCLSGLKYVNDTSVVADTMTFLDSLTRLSSNALSMMVSYDIFGNETETWRPPMTESDGFWEASGSGDKKGLGFRGGLPMNLMPEAIVCKNGGNGCNYKTVQEAVNAAPDNATSRFVIHIKEGVYAEKVRVPFEKKNVIFLGDGMGKTVITGSSNVGQPGMTTYNSATMGILGDGFMAKDLTIENTAGAGAHQAVAFRSDSDMSVLENCEFVGNQDTLYAHSLRQFYKSCRIVGNVDFIFGNSASFFQDCKILVTPREENPEAGETNVITAQGRTDPAQSTGFVFHNCVVNGTDEYVALYKSKPQVHKNFLGRPWKEYSRTVFIQSEFAALITPQGWMPWSDDFALKTLYYGEFENSGPGSNMNQRVPWSRKVPADHVSTYSVQNFIQGGDWIPSPQHRNNNNNNRGRVSIIIYGHVKCLFVDFDKAVHPTELIKKKTHYGHPHRSETRVVGVGCRSGQAKEA 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1625 621 Pfam Plant invertase/pectin methylesterase inhibitor 50 194 IPR006501 GO:0004857
Glsi13g1625 621 MobiDBLite consensus disorder prediction 597 621 - -
Glsi13g1625 621 SMART PMEI_2 45 194 IPR006501 GO:0004857
Glsi13g1625 621 SUPERFAMILY Pectin lyase-like 245 553 IPR011050 -
Glsi13g1625 621 FunFam Probable pectinesterase/pectinesterase inhibitor 51 48 197 - -
Glsi13g1625 621 CDD PMEI-like_3 53 195 - -
Glsi13g1625 621 NCBIfam pectinesterase inhibitor domain 49 194 IPR006501 GO:0004857
Glsi13g1625 621 Pfam Pectinesterase 244 547 IPR000070 GO:0030599|GO:0042545
Glsi13g1625 621 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 194 IPR035513 -
Glsi13g1625 621 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 197 IPR035513 -
Glsi13g1625 621 FunFam Pectinesterase 237 561 - -
Glsi13g1625 621 Gene3D - 238 560 IPR012334 -
Glsi13g1625 621 PANTHER PECTINESTERASE 13 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1625 Glsi-ChrGlsi13 32858166 32860705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1625 36 550 Carbohydrate Esterase AT5G09760 63.654 0.0 691