Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1624 ATGAGTCGAAGTGGCAGAAAGCGCACTTCGAAGTGGGATTTAAGAGATGATCCTGAATTTGTATCTGATAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTGCTGGCAGCGATAGTTCAAGGTGGTCTTATTTAGAAGGGAATGATAAGCTAAAACCTAATTTGGGATTATCATCCAAGGAACCTTTTCCTGGAGGCAGAGTTTCAAATAAGGATGATATCATGCGTAAAGACTACAATAGAGATTTAGATACCCCAATGGCATGGGATACAGATGAAAGTTACAGCATGAAAATGTCTCCTGGGTTCGAGGAATGGAAACACAACAGGCACAGCCAATCCCCAAAACATGGTTGGGACAGTAGAAGTCGGAGCCAGAGCCGAAGCCGGAGCCCTGCCCGTGGTTTTAGGTGGGAATCGGGAACTAATGACAGAAATAGAATAAGAGATGGAGGATTGACACAATCATGTAGAGATTTTGCTGCTGGGAAATGCAGAAGAGGTAGCCGTTGCCATTTTCTTCACCATGATAACCGAAATTATGATGATAGCTGGGAAAGTAGAAACAGGAAAGATGGACCTCCCAGATATTCTGCTCCCCATGAGAGTAGGGACTACTCTGCTAGGAGTGGAAGGTCTAATGAGACTTGTATTCATTTTGCACAAGGCAAGTGTAGAATGGGAGCATCTTGCAAGTATGTGCATCATGGCAATTCTAATGGACTTGGTAAAAGTTCTGTAGATGAATCAACTCGAGAGAGGGAAGTTGATCGAAGGCGCAGAGAGAATTCTTTTGAGCGGGGTGGTGGGCATGAACCAAACCGTAGTGGTGATACTCCCTGCAAATTTTATGCTGTAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCAAGCATCTAGGAGCCCTAATAGAAGATCAAGGGATGATAGGTGGGAGAGCAATCCGGGTGGAGATCAGGCATTGGATAGACCAAAAGGGAGTGACTCATTTAGCCCAAGTAGAAGGTTAAGAGATGATAGATGGGGTTCAGATGGCAACATGGTTGATATGGGTAAAGTGTGGGACAGTCCAAAACGGAATGGTACAGTTACTGTCTCTGATACTGCAAAGCTGGGTGAAGATAAAAGTGGAAATAGGGGTGCCCCAGAACCTGGATTCACATCTTGGCCTAGAAGTGATGGATGGGGCAATAGCTTAGATAACAACAAAATATATGGTGAGCCACCATTTGTGGGTGAGAAGAAGGAAGAAGACCGGTGGAAGGCAGAAAATGCTGTTGCTACTGTTGGTGTATCCCAGTCAATAGTTACAGACAAGTGGCTTGGTGTTGCAGAAATGTCTCCTGATTGGAATTATGGGGTAGGATCTTCTGGGCATATTGAAGATGAGAATGGACAGAATAAGCATGAGTCAACACAGGTTGGTACGTATTTAGCCACCTCTGAACATGACAGAGTACAAGTTGCTCCAGGACAAGGCTTTAATCAGAATGCACAGAATGTAAATGCTTTACATCCTTCAAGCTGTAATGTGGTTGGACAAACTCAAGCGGCAGTCCCCACTGTTCCTCCGCATGGAGGGATAGTTGAAGTTATACAGAACCAAGAAGTTTCTACTGTAAAAAAGTACATTGTTGAGCCAAATATCATGGATGCAAGCTCATCACAAGTTGGTTCCAGAAACACTCCAACTCAGCACACAGTGAGCAATGACCAGATTGCTCAACTTACCAACCTCTCTGCCTCTCTGGCTCATTTCCTTGGAACCAGTCAGCAGCTTCCACAAATATATGCTGCTGTAAATTCTCATGATGCAAATGACACTCTCTCCCTGCCCAAAACTGAAGGGTCTGGTGAGCCTGTTCCTAGTACATTCATCAAGCCTGATCCTGTTGTTCGATTCCAGAAGCAGTATGATCCAATGTGTGATAGTATTGAACCGATGAAGGCTGATGCAAGTGGGATCACCCCAGCTTTTTCTCCTAGTAAAAAAATTACAGATAAAATAGAAATTCCCTCTCTGTTGTCTAATGCAGGTGGACAAAATCATGGCGATCCTTCTAGGATTGCCTGTTCAGAAGAACAACCTATTGTCAGGAGTGAGCATTTAATCCAGTTGCAGCTGGGTCATAAGATTGAAGTTAATAAGGGAAACAATGAAGTGATAGCTGGGGAAAGGCAAGATTCTCGAGAAGATCATAGGAATGCAAAAGAGAATGGTCCTTTGGAAAATATGGACCAAAATGGTGGGCCTGATGAGGCCAAGAAAATGAAGGATATGAAGGGGATTCGTGCTTTTAAATTTGCACTGGTAGAGTTCGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAGATCAACAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGACAAAGTAACTGGTGCTATGCAGGGGGCTCAAATCCCTCAGACACAAGAGAAAATTGACCACTATTTATCAATTTCAAAATCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAAGCTTAG 2556 0.4323 MSRSGRKRTSKWDLRDDPEFVSDSKQLRSGWSSANVAGSDSSRWSYLEGNDKLKPNLGLSSKEPFPGGRVSNKDDIMRKDYNRDLDTPMAWDTDESYSMKMSPGFEEWKHNRHSQSPKHGWDSRSRSQSRSRSPARGFRWESGTNDRNRIRDGGLTQSCRDFAAGKCRRGSRCHFLHHDNRNYDDSWESRNRKDGPPRYSAPHESRDYSARSGRSNETCIHFAQGKCRMGASCKYVHHGNSNGLGKSSVDESTREREVDRRRRENSFERGGGHEPNRSGDTPCKFYAVGNCRNGKYCRFSHDRQASRSPNRRSRDDRWESNPGGDQALDRPKGSDSFSPSRRLRDDRWGSDGNMVDMGKVWDSPKRNGTVTVSDTAKLGEDKSGNRGAPEPGFTSWPRSDGWGNSLDNNKIYGEPPFVGEKKEEDRWKAENAVATVGVSQSIVTDKWLGVAEMSPDWNYGVGSSGHIEDENGQNKHESTQVGTYLATSEHDRVQVAPGQGFNQNAQNVNALHPSSCNVVGQTQAAVPTVPPHGGIVEVIQNQEVSTVKKYIVEPNIMDASSSQVGSRNTPTQHTVSNDQIAQLTNLSASLAHFLGTSQQLPQIYAAVNSHDANDTLSLPKTEGSGEPVPSTFIKPDPVVRFQKQYDPMCDSIEPMKADASGITPAFSPSKKITDKIEIPSLLSNAGGQNHGDPSRIACSEEQPIVRSEHLIQLQLGHKIEVNKGNNEVIAGERQDSREDHRNAKENGPLENMDQNGGPDEAKKMKDMKGIRAFKFALVEFVKELLKPTWKEGQINKEDYKTIVKKVVDKVTGAMQGAQIPQTQEKIDHYLSISKSKLNKLVQAYVEKVQKA 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1624 851 MobiDBLite consensus disorder prediction 108 126 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 727 762 - -
Glsi13g1624 851 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 850 - -
Glsi13g1624 851 SMART c3hfinal6 214 239 IPR000571 GO:0046872
Glsi13g1624 851 SMART c3hfinal6 153 179 IPR000571 GO:0046872
Glsi13g1624 851 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Glsi13g1624 851 ProSiteProfiles Zinc finger C3H1-type profile. 277 304 IPR000571 GO:0046872
Glsi13g1624 851 MobiDBLite consensus disorder prediction 301 401 - -
Glsi13g1624 851 SUPERFAMILY CCCH zinc finger 280 302 IPR036855 GO:0046872
Glsi13g1624 851 MobiDBLite consensus disorder prediction 1 87 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 1 23 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 335 352 - -
Glsi13g1624 851 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 178 IPR000571 GO:0046872
Glsi13g1624 851 MobiDBLite consensus disorder prediction 730 747 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 108 153 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 25 46 - -
Glsi13g1624 851 Pfam CCCH-type zinc finger 282 302 IPR041367 -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 239 283 - -
Glsi13g1624 851 Gene3D - 155 242 - -
Glsi13g1624 851 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Glsi13g1624 851 MobiDBLite consensus disorder prediction 249 275 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 301 323 - -
Glsi13g1624 851 Pfam RNA-binding, Nab2-type zinc finger 219 237 - -
Glsi13g1624 851 Gene3D - 256 313 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 184 215 - -
Glsi13g1624 851 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Glsi13g1624 851 MobiDBLite consensus disorder prediction 184 211 - -
Glsi13g1624 851 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1624 Glsi-ChrGlsi13 32843543 32847972 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi13g1624 zf-CCCH_4 3.6e-06 CL0537