Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1623 ATGGAAATGCAGGAACATATTCTCCGTCACCAAATCCCTATGGGTTGGCCAAACTACGCTATTCAAATACCATCCCCGCCATCATCTTCATCCAGCATACAACCCTCTTCAGATTTTCTGAATGACATATTAGGGATCCAGTTGGAAGAAGAAGAAGAAGAGCTGGGAGCCATGAAGGAGATGCTGTACAAGATGGCAGCTATGCAGCCAGTGGACATCGACCCAGCAAACATCCGAAAACCAAAGAGGCGAAATGTCAGAATCAGCGACGACCCGCAAAGCGTGGCTGCACGACACAGGCGAGAGAGGATCAGTGAGAAAATCCGAATCCTCCAAAGACTTGTCCCTGGGGGAACCAAAATGGACACTGCTTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTTCTCAAGAGACAAATCAGGTTGCTCCAATCAGCTCATTCTCAACATCAACAATGCATTCATACTGTTGCTACTGCTACTGATTGCCCTTTTGCACCAAATTTACTGAACTCCATGGACATGCCGGCCCCGCTGCAATTCAGTGCCGGAGGCCATGCCTCCGGCGCCTTTAATCATGAGTTCGTCTGCAAAGGAGAATTGCAGTGGATGATTGAGACAATGTGTGCTTTAAATAGGAGCATTTCATTCAATAGGACTGCATCGTTCAATCGACGGGCTCTGACTATTGGAAGCCCCAAAGTTAATCGATTCGGATGGGTCTCACGGTGGTTTCAGGTGCTTGTGATTATTGGGTCTGTATTTTCATTCTTCGTTGCCATTGGCGGTGGATACATGTATGCGCTTCCTAGTCTTAGCCAGGCGTTTTTTCACGGGCAAGGTTTCTCGAACCAAAACAGATCACTCAGAAACTGCGATGTTTTGGACGGAAGCTGGGTCCAGGTCCAGTTCCCGCCTTACCCATTGTACAATGCGACAGAGTGTCCTTTTGTAGAACAAGGATTCAATTGCTTGGCTAATGGACGGAGCGACCATGATTATCTTCGTTGGAGGTGGAAACCTAAAAACTGTGATATTCCATGGTTTAATGTGCGTACTATTTTAGAAATGTTTCGAAGCAAAAGAATTGTTTTTGTTGGTGATTCGATGAGTAGAACACAGTGGGAATCCCTGATTTGCATGTTGATGGCGGGGGTAGAGGACAAAAGGAGCGTTTATGAAGTAAATCAAAATAAGATAACAAAGCGTATTAGATTTTTAGGGGTTCGGTTCAGTGCCTTCAATTTCACCATTGAATTCTTTCGTTCAGTTTTCCTGGTGCAACAGGGTCCGATACCTAAACATGCCCCAAAGAGGGTCAAATCAACACTTAGATTGGACAAATTAGACGATATAAGTGATCAGTGGATTGATTCAGATGTTCTTATATTCAACACTGGGCATTGGTGGGTGCCATCTAAACTTTTTGAAGTGGGTTGCTATTTCCAGGTTGGAAGCTCATTGAAACTTGGGATGTCAATTCCTGCTGCCTTCGGAATAGCACTTGAAACGTGGTCATCATGGGTTGAGAGAGAGATTAACACAAGTAGAACACGTGTTTTCTTTAGGACTTTTGAGCCATCTCACTGGAGTGATCAGACCCGTAGGACTTGCCATGTGACCCGGTACCCCGCCGTAGAAGCTGATGGGAGGGACAAAAGCTTGTTTTCAGACACAGCTTTGGAAGTGGTAAAGAATGTCACAGTTCCTATTAATGTTCTCCATGTTACTTCTATGACGGCTTTCCGGAGCGATGCACATGTTGGTAACTGGAGTGACAATCCATCAGTCCCTGATTGTAGCCACTGGTGTCTACCTGGAGTTCCTGATATGTGGAATGAAATTGTGCTCTCCCAACTATTTACTGATAAAAAATCACCTTATCAGCAAATAAAATCACACAGTAAGTTGAAATAA 1920 0.4484 MEMQEHILRHQIPMGWPNYAIQIPSPPSSSSSIQPSSDFLNDILGIQLEEEEEELGAMKEMLYKMAAMQPVDIDPANIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSAHSQHQQCIHTVATATDCPFAPNLLNSMDMPAPLQFSAGGHASGAFNHEFVCKGELQWMIETMCALNRSISFNRTASFNRRALTIGSPKVNRFGWVSRWFQVLVIIGSVFSFFVAIGGGYMYALPSLSQAFFHGQGFSNQNRSLRNCDVLDGSWVQVQFPPYPLYNATECPFVEQGFNCLANGRSDHDYLRWRWKPKNCDIPWFNVRTILEMFRSKRIVFVGDSMSRTQWESLICMLMAGVEDKRSVYEVNQNKITKRIRFLGVRFSAFNFTIEFFRSVFLVQQGPIPKHAPKRVKSTLRLDKLDDISDQWIDSDVLIFNTGHWWVPSKLFEVGCYFQVGSSLKLGMSIPAAFGIALETWSSWVEREINTSRTRVFFRTFEPSHWSDQTRRTCHVTRYPAVEADGRDKSLFSDTALEVVKNVTVPINVLHVTSMTAFRSDAHVGNWSDNPSVPDCSHWCLPGVPDMWNEIVLSQLFTDKKSPYQQIKSHSKLK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1623 639 SMART finulus 94 143 IPR011598 GO:0046983
Glsi13g1623 639 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 347 619 IPR026057 GO:0016740
Glsi13g1623 639 Pfam Helix-loop-helix DNA-binding domain 98 137 IPR011598 GO:0046983
Glsi13g1623 639 Gene3D - 92 161 IPR036638 GO:0046983
Glsi13g1623 639 Pfam PMR5 N terminal Domain 292 346 IPR025846 -
Glsi13g1623 639 FunFam BHLH transcription factor 91 154 - -
Glsi13g1623 639 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 257 617 IPR029962 GO:0016413
Glsi13g1623 639 CDD bHLH_AtIND_like 89 146 - -
Glsi13g1623 639 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Glsi13g1623 639 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1623 Glsi-ChrGlsi13 32830753 32837875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1623 34 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 63.846 3.16e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1623 PC-Esterase 4.3e-80 CL0264