Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1618 ATGGGCAAAACAAAATTGATTCCGGGATTCCGGTTTCACCCAACTGACGTTGAGCTGGTTAAGTACTTTCTGAAGAGGAAGGTCCTGGGTAAAAAATTCTCTGTTGAAGTGATTGCTGAAGTCGATATATACAAGTACGCTCCATGGGATCTCCCAGATAAATCTTTTCTGAGAACTGGGGATTTGGAATGGTACTTCTTTTGCCCAAGAGGAAAGAAATATGCCAGTGGAGCTAGAGTGAATCGGGCTACAGAAGTTGGGTACTGGAAAACTACCGGAAGGGATAGATCTATTCTTCACAATAATCATATTGTGGGGATGATAAAGACTCTAGTGTTTCACACAGGTCGACCGCCTAGAGGAGACCGAACTGATTGGGTTATGCATGAATTTAGACTTGAAGATAAGGATCTGACTGACAAAAACATCTCACAGGACTCCTATGTGCTCTGTAGGCTCTTCCAAAAGGATGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATTTAATGAGGATGACTGGGATAATGATGAGGAAATTGATTGTGTAGAATCTGTTCCTTTTGCTGCTGTGTCTGCACAAGTTCCCATTCTGCCTGTAGCAAATTATAGTTCTGCTGCAACTAACATGCATTTCTCTCCAAGTGGATGCATTGGGTCGTCATCTATGTCATGTCTATCAGATGTGATACCTTCTCCTTGCCTGGTGCATCCTTCAGTTCCTAGTGATCAAGCAATTTCCAATGATGTTTCTCAAGCTCCAGTTGGTGATGATATTTTTTCTATGTTGGAATGTTTCACCGAAGATAACACGTTGGCTATTAATGGAGACAACAAATTTGAGACGGTTGATAATTCTGGTCAGCAAAAAGATGTTGAGGGCTTACCATGTTTGGTTGCCAGTGATATTTTTAAGGACCTGGGAGACCTCAACGACTTGGCTGGATTGGGTGAAGATGGGCATGATTTTTCCTGTGGTCAGAAGGCTGGATATACTACAAACCAAATGCTTCTTCCGGGTGATGTATCCCTGTGGGGGTCGCGTGACCCAGACTTCTTGGAGTTGCTTGACCTAGACTCTACTGAGCAACAAGAAAGTTGGGGTCGATCTGATTTAGATCGTGAGGGTTTGATTATTGAGAAAGGAGATACAGAAAAACGGGAGAACATATAG 1179 0.43 MGKTKLIPGFRFHPTDVELVKYFLKRKVLGKKFSVEVIAEVDIYKYAPWDLPDKSFLRTGDLEWYFFCPRGKKYASGARVNRATEVGYWKTTGRDRSILHNNHIVGMIKTLVFHTGRPPRGDRTDWVMHEFRLEDKDLTDKNISQDSYVLCRLFQKDGPGPRNGAQYGKPFNEDDWDNDEEIDCVESVPFAAVSAQVPILPVANYSSAATNMHFSPSGCIGSSSMSCLSDVIPSPCLVHPSVPSDQAISNDVSQAPVGDDIFSMLECFTEDNTLAINGDNKFETVDNSGQQKDVEGLPCLVASDIFKDLGDLNDLAGLGEDGHDFSCGQKAGYTTNQMLLPGDVSLWGSRDPDFLELLDLDSTEQQESWGRSDLDREGLIIEKGDTEKRENI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1618 392 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Glsi13g1618 392 FunFam Nac domain-containing protein 86 15 159 - -
Glsi13g1618 392 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Glsi13g1618 392 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Glsi13g1618 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 206 - -
Glsi13g1618 392 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1618 Glsi-ChrGlsi13 32781173 32783426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1618 1 315 NAC Transcription Factor Family AT5G09330 52.308 2.09e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi13g1618 NAM 1.1e-34 No_clan