Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1614 ATGTCTACCACTTTCGACGCTTTTCACAACGCAGTGAAATGGGCATCTCAAATTTTCTCTCTTTCTCACTCTGCAATTCTTCTTCAAGCACACCTTCCTGGTTTCTCCTTTCTCTACTTTAGAATGCCCGCTTGGTGGGGAAGAAAATCCGGCAAGAACAAGGAGCAGCTGCAACAGCAGCTTCCCCAGCAGGAATCACATGGAGGCCTTCAATTTAATTTCATTAAATCCCCGATTAGGAATGGTGCAAAAAAAGGAAAGGACAAACCCAAGAGCTTCGACGAGGTCTCAAACATGATCCTTTCTCGTAGTTCCCCCAGAAGCAGCAGGGATTTTATTTCTATAGGTACTGGGGTTGGTGGTTCGTCCTCGGGATTTTCTTGTTGCGATTCGGAAGGTGGAGAGAAGAAAGGCCTTCCCTTGCCTCAACCATCGGTTTCGTCACCGCAGAACTTTGGGAACGATCAAGGAGATGGATTGGGATTTGTGTCGATCTCTGGTTCAAGCGTGAGTTCTACTGGGTCCTACGATGATAATCAAATCTCTCAATTTGATGGCGGCAGAGGGCAACAAGGTGATATGAAGTTCAATATGAGGTCAAAAAGCCCAGGTCCTGGATCTAGAGGGCCCACTAGCCCCACATCAACTCTTCATCCAAGGTTGCATGTTTTGAGTCTTGACTCTCCTACAGGCAAACAAGATGATGGAAGGAGTCAATGTCATCCGTTGCCTCTTCCACCAGGTTCACCTACTAGTCCTTCTGCTCTTTCCAATACGCGAGCAAGTAGTCTGCTAGAAATCGCTACCAACAATCTGTCCAAGTGGAAGAAAGGGAAGCTTTTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTTAATAGTGAAAGTGGACAAATGTGTGCAATAAAGGAAGTCAGGTTTATCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATAAATTTGCTTAGTCAGCTATCGCATCCAAACATTGTTCAATACTATGGGAGTGAACTGGGAGAAGAAGCACTTTCAGTTTATTTGGAATATGTCTCTGGTGGTTCCATCCATAAATTACTTCAGGAATATGGTCCATTTAAGGAACCTGTTATTCAGAATTATGCCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAACACTGTACACAGGGATATCAAAGGGGCTAACATACTGGTTGATCCTAATGGTGAAATCAAGTTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTACCTCAATGCTTTCTTTCAAGGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTGCTGTGGATATATGGAGCTTGGGATGCACAATTCTTGAGATGGCAACATCAAAGCCTCCATGGAGTCAGTATGAAGGGGTTGCTGCAATATTTAAAATTGGTAACAGCAAAGATATGCCAGAAATTCCTGAGCATCTTTCAAAGGATGCAAAGAGTTTCATAAATCTATGTTTACAAAGAGACCCATCAGTTCGCCCAACAGCTCAAAAGTTACTACTAGAGCACCCCTTTATTCGCGATCAATCAGCAACAAGATCTGCAAATGTCAGCTTAACCAGGGATGCTTTCCCCTACATGTTTGATGGAAGCCGGACGCCGCCACATGTAGAGCTTCATTCCAATAGAAGAAGTCTAACTTCACTTGATGGAGATTATGCAACAAAGCCGGCTTTTGCAGCTACTCGAGCATCATTGAGCCCAAGAGATAACTCAAGAATGATTACATCTTTACCGGTATCTCCGACCTCAAGTCCTTTGCGCCAACATGGGTCTACACACAAGAGCTGCACGCTTTCTCCTCCGCATCCATCTTACCCTATGATGGGACAAAATCCCTACACTTTCAGTGACCTCTCTTCATATCCGAAGAGATCAAACGCTACGTTCACTCTTGATCCTTGGCATGAGACGTCTCTATACAATGCCCATACACCTGGGGGATCCCCAATAAGGAGGCTCATTTGA 2046 0.4433 MSTTFDAFHNAVKWASQIFSLSHSAILLQAHLPGFSFLYFRMPAWWGRKSGKNKEQLQQQLPQQESHGGLQFNFIKSPIRNGAKKGKDKPKSFDEVSNMILSRSSPRSSRDFISIGTGVGGSSSGFSCCDSEGGEKKGLPLPQPSVSSPQNFGNDQGDGLGFVSISGSSVSSTGSYDDNQISQFDGGRGQQGDMKFNMRSKSPGPGSRGPTSPTSTLHPRLHVLSLDSPTGKQDDGRSQCHPLPLPPGSPTSPSALSNTRASSLLEIATNNLSKWKKGKLLGRGTFGHVYLGFNSESGQMCAIKEVRFISDDQTSKECLKQLNQEINLLSQLSHPNIVQYYGSELGEEALSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYARQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSKDAKSFINLCLQRDPSVRPTAQKLLLEHPFIRDQSATRSANVSLTRDAFPYMFDGSRTPPHVELHSNRRSLTSLDGDYATKPAFAATRASLSPRDNSRMITSLPVSPTSSPLRQHGSTHKSCTLSPPHPSYPMMGQNPYTFSDLSSYPKRSNATFTLDPWHETSLYNAHTPGGSPIRRLI 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1614 681 Pfam Protein kinase domain 276 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1614 681 CDD STKc_MEKK1_plant 274 532 - -
Glsi13g1614 681 MobiDBLite consensus disorder prediction 143 187 - -
Glsi13g1614 681 SUPERFAMILY Protein kinase-like (PK-like) 272 603 IPR011009 -
Glsi13g1614 681 MobiDBLite consensus disorder prediction 124 258 - -
Glsi13g1614 681 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Glsi13g1614 681 MobiDBLite consensus disorder prediction 605 629 - -
Glsi13g1614 681 SMART serkin_6 275 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1614 681 MobiDBLite consensus disorder prediction 204 221 - -
Glsi13g1614 681 MobiDBLite consensus disorder prediction 605 626 - -
Glsi13g1614 681 FunFam Mitogen-activated protein kinase kinase kinase 273 556 - -
Glsi13g1614 681 Gene3D Transferase(Phosphotransferase) domain 1 272 553 - -
Glsi13g1614 681 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 112 541 - -
Glsi13g1614 681 MobiDBLite consensus disorder prediction 80 102 - -
Glsi13g1614 681 ProSiteProfiles Protein kinase domain profile. 275 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1614 Glsi-ChrGlsi13 32751084 32757804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1614 42 557 MAP Kinase Kinase Kinase AT1G53570 60.985 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi13g1614 Pkinase 1.9e-72 CL0016