Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1609 ATGATCAAAGCAATCTATCCAGCATTCATTTGGAAAAGAATGATAAGAATGCCCAGAAGCAGTAGCAGTGAGAGAAGAAAGAGCTGCAACAGAGGCCATTGGAGACCCGCTGAAGACGAGAGACTACGGCAACTTGTGGAGCAGTATGGTCCCCAGAATTGGAATTTTATTGCGGAACATCTTGAGGGGAGATCAGGGAAAAGTTGCAGATTGAGGTGGTACAATCAACTAGACCCAAATATCGTTAAAAGGCCATTCACTGAGGAGGAGGAAGAAACTCTCCTAGCCCTCCACAAGGTGAAGGGAAACAAATGGGCTGCAATTTCCAGGTTCTTGCCCGGAAGAACAGACAATGCAGTGAAGAATCACTTCCATGTATTAATGGCAAGAAGGAAGCGAGAGCGCTTCACATTGTTTGTTGACTCCAGCACTAACCCTAATTCAGGGATTAATTATAATTTCAGGTTCCAGAACAATAGAAACATGGGCATTTTTGGCATGTCTTCCTCACAGTCATTAACTCCTTGGAGTCATAGCGGCGGTTCAACCATCACAACAGAGTTAGTGAGCTTGGACACTTGTGGTGTAGCTAGTAAGGCTCACAATGACTCAACAAGTGCTTCAAGTGCTGCGGAAAAACCAAACGGTTTGGACCATTTTGCTTGTTATAGAGCCGGTTCTTGTATGCTTAGTAGTTACAATAGTTTCACAGCACCAGGAATTCCCAGTATTGGCAAGGTTGTTCCCCTTCCGTATAGGTTCTCAAACGCCAACAATGGCCAAAGAAGTGAGGCCTATTCCATCATCAAGAGCAAGACAGTGAAGCATCCAGCTGCTGATAACTCTCTGGAAGAGCAAGTTGAAGCTCTTAATGAAAAGAGTGTTTCCTTCATAGACTTTCTTGGCGTGGGAAGTTGTTCTCGCAGTCACAGAGGACCATGA 942 0.448 MIKAIYPAFIWKRMIRMPRSSSSERRKSCNRGHWRPAEDERLRQLVEQYGPQNWNFIAEHLEGRSGKSCRLRWYNQLDPNIVKRPFTEEEEETLLALHKVKGNKWAAISRFLPGRTDNAVKNHFHVLMARRKRERFTLFVDSSTNPNSGINYNFRFQNNRNMGIFGMSSSQSLTPWSHSGGSTITTELVSLDTCGVASKAHNDSTSASSAAEKPNGLDHFACYRAGSCMLSSYNSFTAPGIPSIGKVVPLPYRFSNANNGQRSEAYSIIKSKTVKHPAADNSLEEQVEALNEKSVSFIDFLGVGSCSRSHRGP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1609 313 PANTHER MYB PROTEIN-RELATED 31 208 - -
Glsi13g1609 313 Pfam Myb-like DNA-binding domain 34 92 - -
Glsi13g1609 313 CDD SANT 34 75 IPR001005 -
Glsi13g1609 313 CDD SANT 96 128 IPR001005 -
Glsi13g1609 313 FunFam MYB transcription factor 31 82 - -
Glsi13g1609 313 Gene3D - 84 147 - -
Glsi13g1609 313 SUPERFAMILY Homeodomain-like 30 124 IPR009057 -
Glsi13g1609 313 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Glsi13g1609 313 SMART sant 82 130 IPR001005 -
Glsi13g1609 313 SMART sant 30 79 IPR001005 -
Glsi13g1609 313 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Glsi13g1609 313 Gene3D - 31 82 - -
Glsi13g1609 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Glsi13g1609 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1609 Glsi-ChrGlsi13 32732215 32735810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1609 15 145 MYB Transcription Factor Family AT4G33450 69.925 3.37e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1609 Myb_DNA-bind_6 1.5e-16 CL0123