Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1602 ATGACCATTCCCCACTTATTCAGATGCCCCATCAGTCTAGACTTGTTCGAGGATCCGGTGACTTTATGCACAGGCCAAACCTATGATAGATCAAACATAGAAAAATGGCTAGCTGCTGGTAATCTCACATGCCCTGTCACAATGCAGAAGCTCCATGATTTATCCTTTGTTCCCAATCACACTCTCCGTCATTTGATCGATCAGTGGCTTCAACTCGATCCTCAATTTTATTTTGGTAACTCTTCAACTGTTGATTCTTTAGCTTCTCTCAAACACAGCCTTGAATCTCAGGAATCCACCTTCGAAAACAAGCTCCAAGCACTTGAAAAAATCAGAGTCTTGTCTGATGAATATTGTACTTTCAAGAAATCTTGTTTCCTCCAACTGGGTTTCTTACCTTTACTTTTGGAACTAGTTTTTGGAACAGTAGAGGCTCAACTATCCGAACTTTACATGGAGTATATAGAGCTAGCACTTTCTTGCATTCTAAAGTTGCTGCCTCTTGGCAGTTCGGAGCCTCTAAATATGCTCAAAGAAGAGTCTAAATTAGAATCATTCCTACTATTATTCGAAAAGGGCACTATCACTATTAAAACCAGTCTCTGTAATCTCATAGATTCAGCAGCAACATCACACACAGAAGAGGTATGTTTAATCCTTGGAAACTACCACAAACTAGTGCATCAGATTGTTATTCTTGCTGGCCAAAATTGCGAGGCGTCTAAGGCTGCAATTAAAGCCATCTCAGCGTTATGTTCGCTGCAATGTAACAGAGAGAATTTAGTGAAAGAAGGGGCAATAGATGGCATCATAAGGTACATTTCAGGTTGTGAAAGAAGAGAAATGAAATTGGCTCCATTGGCAATGGAAACAATGGAGAAATTGTTGGAAGTAGAGAGTGGCAAAGAGGCATTGGTGAATAACCCAAATGGCATTGAAACTTTGGTTAAGATGATATTCAGTTTCAGCGTATGTAATGAAGAGTGCAGTGAGAATGCTGTTGGGTTACTTTTGATAATCTGTCGTGATTCAGGGCGTGCGATAGAGGAAGCCATCGGTGCAGGAGTTCTGACTCAGTTGCTGTTGCTTCTGCAGAGTCAATGTAGCACCAGGACTAAAACCAAGGCAAGGATGCTTCTCAAATTGCTAAGATCCAAGTGGGCTGACAAAGTACCAAACCAGGTCTAG 1188 0.4125 MTIPHLFRCPISLDLFEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDLSFVPNHTLRHLIDQWLQLDPQFYFGNSSTVDSLASLKHSLESQESTFENKLQALEKIRVLSDEYCTFKKSCFLQLGFLPLLLELVFGTVEAQLSELYMEYIELALSCILKLLPLGSSEPLNMLKEESKLESFLLLFEKGTITIKTSLCNLIDSAATSHTEEVCLILGNYHKLVHQIVILAGQNCEASKAAIKAISALCSLQCNRENLVKEGAIDGIIRYISGCERREMKLAPLAMETMEKLLEVESGKEALVNNPNGIETLVKMIFSFSVCNEECSENAVGLLLIICRDSGRAIEEAIGAGVLTQLLLLLQSQCSTRTKTKARMLLKLLRSKWADKVPNQV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1602 395 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Glsi13g1602 395 Coils Coil 91 111 - -
Glsi13g1602 395 SUPERFAMILY ARM repeat 92 371 IPR016024 -
Glsi13g1602 395 CDD RING-Ubox_PUB 4 51 IPR045210 -
Glsi13g1602 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Glsi13g1602 395 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Glsi13g1602 395 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
Glsi13g1602 395 FunFam RING-type E3 ubiquitin transferase 3 74 - -
Glsi13g1602 395 SUPERFAMILY RING/U-box 2 71 - -
Glsi13g1602 395 PANTHER WDSAM1 PROTEIN 2 389 IPR045185 GO:0061630
Glsi13g1602 395 Gene3D - 75 395 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1602 Glsi-ChrGlsi13 32699694 32700881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1602 3 389 U-box Gene Family AT1G49780 31.773 9.42e-45 158