Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1600 ATGGCAGATGGAAGCGTCAACCTTCCTCCTGGGTTTCACTTCTCTCCAACGGATGAAGAACTCGTCCTTCACTTTCTCTATTGCAAGGCTTCTCTTTCACCATGCCATCCTAATATTATCCCCGATCTTGATCTTTCTGATCCTTGGGAATTAAATGGTAAGGCGTTGTCAAGTGGAAATCAATACTATTTCTTCACCAAAGTGAACGAGGACAGAGCCACAGAAAGTGGGTATTGGAAGGAGATAGGTGTCACTGACTCTATAGTCTCAGCCGCTGACAAGAAAGTGGGATTCAAGAATTACCTTGTATTCAACATTGGGGAAGCCCCAGAAGGTACTGAAACCAGTTGGGTAATGCAGGAGTATCATCTTTGCTCATCTGGGTTTAACACTACATCTTTTAGGAGCACCCGAGGAAGACGAAAACCTGATCAAAGCCAGAGCAAATGGGCTTTATGCCGAGTTTATGAAAGGAATAGAGATTCTCCTAAAGGAGTAAATTGCTGTAGCGATGACGAGGATGACAGTGGAACAGAGCTTTCATGGCTAGACGAAGTCTTTTTGTCGTTGGATGATGATCTTGAAGAAATTAAGCTGGCATATTATTAG 609 0.4335 MADGSVNLPPGFHFSPTDEELVLHFLYCKASLSPCHPNIIPDLDLSDPWELNGKALSSGNQYYFFTKVNEDRATESGYWKEIGVTDSIVSAADKKVGFKNYLVFNIGEAPEGTETSWVMQEYHLCSSGFNTTSFRSTRGRRKPDQSQSKWALCRVYERNRDSPKGVNCCSDDEDDSGTELSWLDEVFLSLDDDLEEIKLAYY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1600 202 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Glsi13g1600 202 Pfam No apical meristem (NAM) protein 9 124 IPR003441 GO:0003677|GO:0006355
Glsi13g1600 202 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Glsi13g1600 202 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Glsi13g1600 202 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1600 Glsi-ChrGlsi13 32687790 32688579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1600 1 159 NAC Transcription Factor Family AT1G61110 38.418 2.47e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi13g1600 NAM 5.4e-25 No_clan