Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1591 ATGATGGAAGATGAGAGCCATAACAATTTGGCAAATGGGGTCAGCACTGGAAGCCCTGAAAGTCCTTGCTTAAAGACAAGCAACAATAACACCAGCAACAAAGAACAAGATCGCTTTCTCCCTATAGCCAATGTAGGTAGAATCATGAAGAAAGTCATCCCTGGCAATGGAAAAATCTCTAAGGATGCTAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTTGTCACTGGGGAAGCCTCTGACAAATGTCAAAGAGAAAAGAGGAAGACCATCAATGGGGACGATATCATTTGGGCTATCACAACCCTAGGCTTTGAGGATTACGTGGACCCTTTAAAATCCTACCTCCAAAAATATAGAGACATAGAAGGAGAAAAGCTTCATATTCCAAAACAACAACGTTCGGAACAAAGGCTACATCAACAGCAACATCACCATCACCACCAAGACCATAATAATCTACCTTTAAATAGTGTATATTCTTCAGCAAATCTCATTTCTCAGCCTCCTTTTGTGGCCACTGATCAGCCATATTCCCTGCCATTCTCTCCCAATTCAATTCAGAAACAGTTACAGACGCAAGACCAGATTGATTCTGTGGGGCATTGGTAA 621 0.4155 MMEDESHNNLANGVSTGSPESPCLKTSNNNTSNKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRDIEGEKLHIPKQQRSEQRLHQQQHHHHHQDHNNLPLNSVYSSANLISQPPFVATDQPYSLPFSPNSIQKQLQTQDQIDSVGHW 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1591 206 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Glsi13g1591 206 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Glsi13g1591 206 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Glsi13g1591 206 MobiDBLite consensus disorder prediction 134 159 - -
Glsi13g1591 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi13g1591 206 MobiDBLite consensus disorder prediction 1 38 - -
Glsi13g1591 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Glsi13g1591 206 Gene3D Histone, subunit A 26 159 IPR009072 GO:0046982
Glsi13g1591 206 MobiDBLite consensus disorder prediction 8 38 - -
Glsi13g1591 206 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi13g1591 206 FunFam Nuclear transcription factor Y subunit B-3 28 154 - -
Glsi13g1591 206 SUPERFAMILY Histone-fold 36 149 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1591 Glsi-ChrGlsi13 32638248 32638868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1591 13 206 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.049 3.64e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi13g1591 CBFD_NFYB_HMF 1.3e-27 CL0012