Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1587 ATGGTTGTTGATGATGGTAACTTCGATATTATGGACATTGAAGACCTTATTTTAGATGACATAGACAAAAGGCCAAGCTTCCATGAATTCCCAGAGAGCCAGCTCTGTGTGCCACCTGACCCAATAGAGGACTTGGAATGGTTCCCAAGCTTCTCTGATGATTTTATATCTTTGAGCGGTGTGGGATTGATGCCAGAGCACGAAATCAGCTCTAATTTTTTTGCCAGTGCCAAGCCCAGACATTACCAACCTCCAGACAAACTCACGGTCTGCAACTTTCCAGTGACTCCGGAGCAGCTAGATCATGGAAAAACAAAGCCACTACCCAAGACAGTGAAACGTCAGAATGGCAGTGGAATGGAAAAAGTTCGGGTCGAAATATCGGAGGCGGAGTTTGCTGGGTTTATAAATAAGAAAGCTAGGACGAGAAAGAGGGGTAATAAATTGGAAGATCAAAAGCGAAAACGGGGTTTAGCGGAGAAATGGGTGAGAAAGAGATGCAGCCATTGCCAGACGGAAGAGACACCGCAATGGAGGGTTGGGCCTCTGGGACCGAAGACGCTGTGCAATGCCTGTGGGGTGCGGTTCAAGTCCGGAAGGTTGGTGCCGGAATATCGCCCCGCCTCGAGTCCAACTTTTGACGGCTTTAGGCATTCTAATTACCATAGGAAAATACTGAAAATGCGAGGTTTAGTTAATTACGATGACTATTAA 714 0.465 MVVDDGNFDIMDIEDLILDDIDKRPSFHEFPESQLCVPPDPIEDLEWFPSFSDDFISLSGVGLMPEHEISSNFFASAKPRHYQPPDKLTVCNFPVTPEQLDHGKTKPLPKTVKRQNGSGMEKVRVEISEAEFAGFINKKARTRKRGNKLEDQKRKRGLAEKWVRKRCSHCQTEETPQWRVGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFDGFRHSNYHRKILKMRGLVNYDDY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1587 237 ProSiteProfiles GATA-type zinc finger domain profile. 165 197 IPR000679 GO:0006355|GO:0043565
Glsi13g1587 237 MobiDBLite consensus disorder prediction 99 119 - -
Glsi13g1587 237 Pfam GATA zinc finger 167 200 IPR000679 GO:0006355|GO:0043565
Glsi13g1587 237 PANTHER GATA TRANSCRIPTION FACTOR 116 229 - -
Glsi13g1587 237 Gene3D - 159 227 IPR013088 GO:0006355|GO:0008270
Glsi13g1587 237 CDD ZnF_GATA 166 216 IPR000679 GO:0006355|GO:0043565
Glsi13g1587 237 SMART GATA_3 161 211 IPR000679 GO:0006355|GO:0043565
Glsi13g1587 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 224 - -
Glsi13g1587 237 FunFam GATA transcription factor 14 161 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1587 Glsi-ChrGlsi13 32607618 32608331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1587 6 229 C2C2-Gata Transcription Factor Family AT4G36240 37.288 2.47e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi13g1587 GATA 1.9e-16 CL0167