Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1558 ATGAATGGTGAATTAGAGTTACCCCCTGGGTTCAGATTTCACCCAACAGACGAGGAGCTGGTGAATCATTATTTGTGCAGAAAATGCGCTAAGCAATCTATAGCTGTTCCTATTATCAAAGAGATTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGCACCGTACGGTGAGAAAGAATGGTACTTCTTCTCTCCGAGGGACAGAAAATATCCCAACGGATCGAGACCGAACAGGGCGGCAGGAAGTGGGTATTGGAAGGCGACGGGAGCAGACAAGGCGATAGGGAAGCCAAAACCACTTGGAATCAAGAAGGCACTTGTTTTCTATACGGGTAAAGCCCCCAAAGGGCTCAAAACCAACTGGATCATGCACGAATATCGCCTTGCCAATGTTGATAGATCCGCTCGCAAGAACAACAACTTGAGGCTTGACGACTGGGTATTATGCCGAATTTACAATAAGAAAGGTGCCATTGAGAAATACAATAACCTGGATCAGAAATCGGCAAGCTTTTCAGATGTTGATGAACACGAAAATAAACCACAAATCAACACGGTACCCTCATCGACTCTCGCCCATGACCAATTGTACATGGACACGTCGGAGTCGGTGCCCAGGTTGCACACCGACTCCAGCTGCTCCGAGCACGTGGTTTCCCCCGATTTCGCCTGCGACAAGGAGGTACAGAGTGAGCCCAAGTGGAATGAACTAGCGCTGGGAATAGGAGATGCCTTCGATTTTCAGTTCAATTACATGGATAATAATAACCTCACGGCAGATGACCCCTTTGCCCCTCAGGTCCAGTACCAAATGAACCAGCTCTCGCCATTGCAGGACATGTTCATGTATTTACAGACACCATTTTGA 876 0.4715 MNGELELPPGFRFHPTDEELVNHYLCRKCAKQSIAVPIIKEIDLYKFDPWQLPEMAPYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGKPKPLGIKKALVFYTGKAPKGLKTNWIMHEYRLANVDRSARKNNNLRLDDWVLCRIYNKKGAIEKYNNLDQKSASFSDVDEHENKPQINTVPSSTLAHDQLYMDTSESVPRLHTDSSCSEHVVSPDFACDKEVQSEPKWNELALGIGDAFDFQFNYMDNNNLTADDPFAPQVQYQMNQLSPLQDMFMYLQTPF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1558 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 204 - -
Glsi13g1558 291 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Glsi13g1558 291 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Glsi13g1558 291 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Glsi13g1558 291 FunFam NAC transcription factor 16 161 - -
Glsi13g1558 291 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1558 Glsi-ChrGlsi13 32153335 32154599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1558 1 291 NAC Transcription Factor Family AT1G01720 65.217 5.35e-130 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi13g1558 NAM 3.2e-39 No_clan