Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1553 ATGGGCAGGGAACATTCATCTGAAATGGTAAAGGAAGAAGTGAGTAATGATAGCTCCTCAAATGTTGAGACTGAGGATTTGGAATCTCAATCTCAGCATAGTCTTGAGAAGGAGACATGCTGGACAAATTGTCGTGTGTGCCAATGTGCTGAATCTGATAAAAGGGGAGATGCTGCACTAGAATTTTTGGGCATCACTCCAGTTATAGAAGCACGTACAAGTAATGGAGAACTAAGTTCCAATTGTGAGGAAATTTCCAAAAATGTGTCTTTTAAAAGAAATGTTGGAAGTAAATCAGGGACAGTGGAGTTTGTTAGCCCTGATGGGGAAGTTTTCATTTGTAATCCTGATTTGGAAATGGGTATGTCTCATCAAGACACTCTAATTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTACACTACGCTTGTGCACTCAAATGGTTTATCAATCATGGATCTACCATCTGTGAAATATGTGGACATGTGGCAAAAAATATCAGAATTGCTGACTTCAATAAAGTTGTTAGTTCTTTGAAGGAGTATGAAACATTGAGGGAAAGAACTGCCAGTGGGGATCCCAGTCCTGCTCAAGTTCATGCAGATAATGGTGTAGATCCTGATGCTGTAGCTGCTATCCGGAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTGTCCGCATAGTAGCAGTAACAATAACAACAATAATAATGTGGATACATTTTCACAGGTTGTTTCTGAACAACCTTTAAATACTGTTACTGAAGATGCTGCACCTGTTCAAAATCCTGCAACTAAGTGGGCAGTAGAAGGTACGGGGATCCTGCTTGCTACTGGGCTGCTTACTGTCACCCTTGCTTGGCTCATAGCTCCTCGTGTTGGAAAGAAAACTGCAAGAAGCGGTCTTCATATCCTACTTGGAGGTATTTGCGCTTTAACAGTTGTGGTTTTCTTCCGCTTTTTCGTGCTTACCAGAATCAAGTATGGACCTGCACGGTACTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCACGGACACACAGTGCCCATACGACGTGA 1086 0.418 MGREHSSEMVKEEVSNDSSSNVETEDLESQSQHSLEKETCWTNCRVCQCAESDKRGDAALEFLGITPVIEARTSNGELSSNCEEISKNVSFKRNVGSKSGTVEFVSPDGEVFICNPDLEMGMSHQDTLIELGCCCKNDLALVHYACALKWFINHGSTICEICGHVAKNIRIADFNKVVSSLKEYETLRERTASGDPSPAQVHADNGVDPDAVAAIRRQRLSEIALWFCPHSSSNNNNNNNVDTFSQVVSEQPLNTVTEDAAPVQNPATKWAVEGTGILLATGLLTVTLAWLIAPRVGKKTARSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1553 361 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Glsi13g1553 361 MobiDBLite consensus disorder prediction 13 32 - -
Glsi13g1553 361 PANTHER ZINC FINGER, RING-CH-TYPE 11 328 - -
Glsi13g1553 361 MobiDBLite consensus disorder prediction 1 32 - -
Glsi13g1553 361 SMART ringv_2 113 163 IPR011016 GO:0008270
Glsi13g1553 361 SUPERFAMILY RING/U-box 127 166 - -
Glsi13g1553 361 Pfam RING-variant domain 126 162 IPR011016 GO:0008270
Glsi13g1553 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1553 Glsi-ChrGlsi13 32141077 32144157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1553 1 351 C3H Transcription Factor Family AT5G08750 64.365 8.30e-156 440