Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1550 ATGAGACTTGAGAGTAGTCGGGACATGTCCAACAGTGACAAGATAACAAATTCGAGGGCCTTTACTTTCTCGTTCTGTTGGCAACACCGAGGAGGAGGAGGAGTCATGGGAGATGGCCCTGGTGCCACCGCTGCCAACCGGTCTAACAACAATAACAGTGGCAATAGCAGTAAGCCCGAGTGGCTGCAACAGTATGATCTGATAGGGAAGATTGGCGAAGGTACCTATGGTCTTGTATTCCTCGCAAGGATCAAGTCTCCGACCAATCGCGGAAAATCCATTGCTATCAAGAAATTCAAGCAATCCAAGGATGGCGACGGCGTCTCTCCCACCGCTATTCGTGAAATTATGTTACTCAGGGAGATATCACACGAAAATGTTGTGAAGCTTGTGAATGTTCACATAAACCATGCGGACATGTCACTGTATCTAGCCTTTGATTATGCTGAACATGACCTTTATGAAATTATCAGGCATCACAGGGACAAAGTCAACCATTCTATTAATCAATATACTGTTAAATCATTACTCTGGCAGCTGCTTAATGGACTAAACTATCTGCACAGTAATTGGATAATTCATCGAGATCTAAAGCCATCCAACATATTGGTTATGGGCGAAGGAGAGGAACACGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAGGCCCCTCTGAAGCCATTATCTGAAAATGGAGTTGTTGTTACCATTTGGTATCGGGCACCTGAGTTGCTTCTTGGGGCAAAACATTACACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTGTTGACGTTGAAGCCACTGTTTCAAGGAGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAGCTTGACAAGATATTCAAGGTTTTAGGCCATCCCACGTTAGAAAAGTGGCCTTCCTTAGCACATCTTCCCCATTGGCAACAAGATCTGCAGCATATACAAGGGCACAAATATGACAACACTAGCCTTTGTAATGTTGTACACCTACCTCCTAAAAGTCCGGCATATGACCTATTGTCAAAGATGCTTGAGTATGATCCTCGAAAGCGGATAACAGCTGCACAAGCTTTGGAACATGAGTATTTCAAAATGGAACCATTCCCTGGAAGGAACGCACTTGTACCCTGTCAACCTGGAGAGAAAATTGTGAACTATCCCACTCGTCCAGTTGACACAACTACTGATTTTGAAGGCACAACCAATCTACAACCTTCACAACCGGTTTCATCTGGAACTGCAGGCAGCATGACAGGCGCTCATGTACCAAATAGATCTGTCCCTCGGCCGATGAATGTTATGCCAAGGATGCCACATCAAGCAATGCAAGCTTATAATCTCCCATCCCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCATGCCACGAGGTGTTGCACAGAGCCATCAGCAGCAGCAGTTGAGAAGGAAAGACGGAATGATTATTTCTGTGAGGTTTTGCTGGTAG 1506 0.4522 MRLESSRDMSNSDKITNSRAFTFSFCWQHRGGGGVMGDGPGATAANRSNNNNSGNSSKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLAHLPHWQQDLQHIQGHKYDNTSLCNVVHLPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMEPFPGRNALVPCQPGEKIVNYPTRPVDTTTDFEGTTNLQPSQPVSSGTAGSMTGAHVPNRSVPRPMNVMPRMPHQAMQAYNLPSQAGMGGGMNPGGMPRGVAQSHQQQQLRRKDGMIISVRFCW 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1550 501 FunFam Cyclin-dependent kinase e-1 53 148 - -
Glsi13g1550 501 SUPERFAMILY Protein kinase-like (PK-like) 60 377 IPR011009 -
Glsi13g1550 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Glsi13g1550 501 MobiDBLite consensus disorder prediction 409 432 - -
Glsi13g1550 501 PANTHER CELL DIVISION PROTEIN KINASE 63 381 - -
Glsi13g1550 501 SMART serkin_6 65 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1550 501 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
Glsi13g1550 501 MobiDBLite consensus disorder prediction 37 59 - -
Glsi13g1550 501 Gene3D Transferase(Phosphotransferase) domain 1 148 389 - -
Glsi13g1550 501 Pfam Protein kinase domain 65 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1550 501 ProSitePatterns Protein kinases ATP-binding region signature. 71 98 IPR017441 GO:0005524
Glsi13g1550 501 FunFam Putative cyclin-dependent kinase E-1 149 388 - -
Glsi13g1550 501 CDD STKc_CDK8_like 64 375 - -
Glsi13g1550 501 MobiDBLite consensus disorder prediction 409 439 - -
Glsi13g1550 501 MobiDBLite consensus disorder prediction 43 59 - -
Glsi13g1550 501 ProSiteProfiles Protein kinase domain profile. 65 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1550 Glsi-ChrGlsi13 32123345 32135754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1550 58 496 Core Cell Cycle Gene Families AT5G63610 79.326 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Glsi13g1550 Pkinase 1.5e-68 CL0016