Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1542 ATGACCAATTGGCTGATATTCTTTGCTATCTTAAGACTCAGCTATGCAACTACGGAACCTGATGTGGAAGGTGAAGCTTTGATTGAATTTTTGAAGGTCCTCAATGATTCCAATAATCAAATAACAGATTGGAATAGTTTTCTTGTGAGCCCTTGCTTTAGCTGGTCTTATGTCACTTGTAGAAACGGTCATGTCATATCTCTGAGCCTGGAATCAAAAGGATTTTCTGGAACACTTTCTCCTTCAATTACGAAGTTGAAATATCTGGTTAGCTTGAAACTACAGAACAATAGCCTTTCGGGATTGTTACCGGATTATATTGCTAACTTGACTCACCTACAATATCTAAATCTTGCTGACAATAATCTTAATGGTTTTATACCAGCCACATGGGGTCAACTTTCCACTCTGCAGCATCTGGTACTGAGAGGGAATGACTTATCTGGAACAATCCCAGAAACTGTTGCAAATCTTAGTGGGGATCTTTCATCTAATGATTTAACTGGAAGCATCCCTATGCAACTCTTTTCAGTTCCGATGTTCAACTTTTCAAATACGCAACTTCGTTGTGGCTCTAGCTTGGAGCAGCCTTGTGTTTCTAATTCAGCTCTTCCAGCTTCACCCAACAAATCGAAACTTGCACTAGGTTTAAGTTTTGCAAGTTTTAGTGCATTTGCACTTCTGTGTCTTGGGGCTATCATTGCATATGGGTACCATTACATCCAGAGACACAAAAATGATGTTTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATTTGCTTTGGGCAACTGAGGAGATTTTCTTGGCGTGAACTACAACTAGCTACTAAAAATTTCAGTGAAAGCAATGTGATTGGCCAGGGAGGCTTTGGAAAAGTTTACAAAGGAGTACTCTCAGACAAAACTAAGGTTGCTGTGAAACGCCTGGCTGATTATCATAATCCTGGTGGAGAGGCTGCATTCCAAAGAGAAGTTCAACTCATAAGTGTTGCTGTTCATAGAAATCTCCTGCGATTAATTGGGTTCTGTACAACCTCAACTGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGCGTAGCATATAGATTGAGAGATTTAAAGCCTGAAGAGAAGGGTTTGGACTGGGCAACAAGGAAACGGATAGCTTTTGGCACGGCACATGGACTGGAGTATCTGCATGAGCAATGCAATCCTAAGATTATACATCGTGATTTAAAGGCTGCAAACATCCTATTAGATGATGAGTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCTAAGTTGGTTGATGCAAGGTTGACTTACGTTACCACTCAAGTGAGGGGCACAATGGGTCATATTGCTCCAGAATACTTGTCCACTGGAAAATCATCAGAAAAGACAGATGTGTTTGGATATGGTATAACTCTTCTTGAAATCGTCACTGGTCAGCGTGCAATAGACTTCTCTCGGCTTGAAGAGGAGGAGGATGTTCTTCTACTTGATCACATTAAGAAGCTTCTGAGTGAGAATAGGTTGGAGGACATTGTGGACAGAAACTTGGAGAGTTATGATCCGAAAGAAGTGGAGACCATTGTGCAGGTAGCATTGCTTTGCACGCAAGGACTGCCCGAGGAGCGTCCAAGCATGTCAGAGGTGGTGAATTTGCTGGAGGGAGATGGTTTGGCAGAGAGATGGGCTGAATGGGAGCAGCATGAAGAGATGAACAATCGAGAATTCTCACTCTTATCTCACCAATTGGCTTGGCCTGATGAATCTACTTATGATCTGGACGCTATACAGCTTTCTAGAGCAAGATAG 1809 0.4163 MTNWLIFFAILRLSYATTEPDVEGEALIEFLKVLNDSNNQITDWNSFLVSPCFSWSYVTCRNGHVISLSLESKGFSGTLSPSITKLKYLVSLKLQNNSLSGLLPDYIANLTHLQYLNLADNNLNGFIPATWGQLSTLQHLVLRGNDLSGTIPETVANLSGDLSSNDLTGSIPMQLFSVPMFNFSNTQLRCGSSLEQPCVSNSALPASPNKSKLALGLSFASFSAFALLCLGAIIAYGYHYIQRHKNDVFVDVSGEDESKICFGQLRRFSWRELQLATKNFSESNVIGQGGFGKVYKGVLSDKTKVAVKRLADYHNPGGEAAFQREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKPEEKGLDWATRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARLTYVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLEIVTGQRAIDFSRLEEEEDVLLLDHIKKLLSENRLEDIVDRNLESYDPKEVETIVQVALLCTQGLPEERPSMSEVVNLLEGDGLAERWAEWEQHEEMNNREFSLLSHQLAWPDESTYDLDAIQLSRAR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1542 602 Gene3D Transferase(Phosphotransferase) domain 1 357 573 - -
Glsi13g1542 602 SUPERFAMILY Protein kinase-like (PK-like) 259 554 IPR011009 -
Glsi13g1542 602 Pfam Protein kinase domain 281 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1542 602 Gene3D Ribonuclease Inhibitor 20 200 IPR032675 -
Glsi13g1542 602 Gene3D Phosphorylase Kinase; domain 1 249 356 - -
Glsi13g1542 602 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 564 - -
Glsi13g1542 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Glsi13g1542 602 Pfam Leucine rich repeat 89 147 IPR001611 GO:0005515
Glsi13g1542 602 FunFam Somatic embryogenesis receptor kinase 1 249 356 - -
Glsi13g1542 602 SMART serkin_6 280 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1542 602 SUPERFAMILY L domain-like 23 189 - -
Glsi13g1542 602 ProSiteProfiles Protein kinase domain profile. 280 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1542 602 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Glsi13g1542 602 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Glsi13g1542 602 FunFam Nuclear pore complex protein NUP107 21 173 - -
Glsi13g1542 602 FunFam Somatic embryogenesis receptor-like kinase 1 357 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1542 Glsi-ChrGlsi13 32072111 32075477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1542 1 602 Receptor kinase-like Gene Family AT5G10290 57.471 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi13g1542 Pkinase 3.1e-44 CL0016